Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E22
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 67 2e-12
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 56 4e-09
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 42 5e-05
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 41 2e-04
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 2.1
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 27 2.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 2.7
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 26 3.6
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 4.8
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 26 4.8
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 6.3
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 8.3
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 8.3
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 8.3
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 25 8.3
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 66.9 bits (156), Expect = 2e-12
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Frame = +3
Query: 195 SEELAQESLEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMA 374
+ +L +E+ EWI N D+ + L+ G +LC++ ++ S M
Sbjct: 2 TSQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMP 57
Query: 375 FKCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGGF--GK-P 542
F MENI+AF+ A+Q+ VP+Q+ FQT DL+ER+N V+ + S R A GK
Sbjct: 58 FVQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVR 117
Query: 543 SIGPKEAEKNVRNFSEE 593
+GPK AEK R FS +
Sbjct: 118 GLGPKLAEKKPRVFSAQ 134
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 56.0 bits (129), Expect = 4e-09
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +3
Query: 213 ESLEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVS-KMAFKCME 389
E+ +WI G G F + L++G +L LV QP+ + K+ S ++ F+ +
Sbjct: 46 EAKKWIEECLGTD---LGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102
Query: 390 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 512
NIN FL+ +G+P F+ D++E +NL V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 42.3 bits (95), Expect = 5e-05
Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Frame = +3
Query: 114 VLNKMANNRATKSGFAAEAQRKINSKYSEELAQESL----EWIRVITGEPENISGDMDNF 281
++ K N+ K ++ +++ ++ ++ LA L E + + E N ++D+F
Sbjct: 29 MIQKFENHYVFKKDMKSKRNKEVKNQMNDWLAYGYLCSVHEAKKWLEEETNNEYQNLDDF 88
Query: 282 YEVLKDGTLLCKLVNTIQPNMVKKVNVS-KMAFKCMENINAFLEAARQLGVPAQETFQTV 458
+ L +G +LC+L P + +++ + +NAF +G+ F+T
Sbjct: 89 VDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPFRFETK 148
Query: 459 DLWERQNLNSVVICLQSL 512
DL R N+ V+ CL +L
Sbjct: 149 DLVRRFNIPKVIYCLHAL 166
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 40.7 bits (91), Expect = 2e-04
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Frame = +3
Query: 123 KMANNRATKSGFAAEAQRKINSKYSEELAQESLEWIR-VITGEPE-----NISGDMDNFY 284
++ R T G ++ IN EE +E ++ I V+ G+P+ I+ + F+
Sbjct: 91 EVKKGRITIKGSSSSVSHTIN----EEERREFIKHINSVLAGDPDVGSRVPINTETFEFF 146
Query: 285 EVLKDGTLLCKLVNTIQPNMVKKVNVSKMA-------FKCMENINAFLEAARQLG 428
+ KDG +L KL+N P+ + + ++K FKC+EN N + +A+ +G
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 32.3 bits (70), Expect = 0.055
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Frame = +3
Query: 255 NISGDMDNFYEVLKDGTLLCKLVNTIQPNMV--KKVNVS------KMAFKCMENINAFLE 410
+++ + +F+ L+DG +L + + I PN V KKVN + M FK +EN N ++
Sbjct: 399 DVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVD 458
Query: 411 AARQLG 428
+ G
Sbjct: 459 LGKNQG 464
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -2
Query: 469 SHRSTVWNVS*AGTPSCRAASRNALMFSM 383
+++S +W + +G P+C+ + L+FS+
Sbjct: 946 NYKSGIWKLVLSGLPNCKTVFEHLLLFSL 974
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 248 FAGDNSDPFQRLLGKFFAVFTVDLSL-RFC 162
F GDNS + + F A+F + L + FC
Sbjct: 269 FVGDNSSEYLEFVATFMALFMIGLGIFNFC 298
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 387 ENINAFLEAARQLGVPAQETFQTVDLWE 470
E + AF+E A+Q G+P E W+
Sbjct: 131 EELQAFIEEAKQQGIPIDENATKKKSWD 158
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 259 MFSGSPVITRIHSNDSWASSSLYLLLIFLCAS-AANPDLVARLLAIL 122
++SG+ + I S A ++Y+L ++ AS AA+ D AR L +L
Sbjct: 43 LYSGAKTLFEIEQTGSAADLAIYMLDVYEKASYAASLDNKARALTLL 89
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 592 SSEKFLTFFSASLGPIDGLPKPPAFLPND 506
+S+ +T +S G + G +PP LPND
Sbjct: 184 ASDLGITVYSTEFGKVLGRLEPPKRLPND 212
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 319 SLHNNVPSLSTS*KLSISPEMFSGSPVITRIHSNDSWASSSLY 191
S ++VP+LST IS E+F GS +I SN+ ++ + Y
Sbjct: 680 SYQSDVPNLSTK---IISVELFEGSHSNEKIDSNEIYSRHNDY 719
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 277 LSISPEMFSGSPVITRIHSNDSWASSS 197
L +SPE+FS + V RI + W S+
Sbjct: 372 LGVSPELFSQNLVRPRIKAGHEWVISA 398
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 157 LPQKRRERSTVNTAKNLPRSRWN 225
+PQ + + V+ AKN+P+ ++N
Sbjct: 92 IPQLKNKNDEVSQAKNIPKMKFN 114
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 361 YPRWRSNAWKTL 396
YPRW N WK L
Sbjct: 24 YPRWTFNKWKAL 35
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 382 AWKTLTHSSRQRGNSACRLKK 444
AWK L RQRGN ++K
Sbjct: 169 AWKMLGECHRQRGNGRVNIEK 189
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +1
Query: 358 TYPRWRSNAWKTLTHSSRQRGNSACRLKKHSKPSIYGKDRTS 483
+Y W+ WK L R+ CR + S Y + +T+
Sbjct: 444 SYRSWKKEYWKELLEEGRKFERQLCR-NVFGRSSFYVQQKTA 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,132
Number of Sequences: 5004
Number of extensions: 54595
Number of successful extensions: 166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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