Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E20
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     29   2.2  
10_07_0193 - 13954819-13954950,13955340-13955375                       29   2.9  
05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211...    28   5.1  
11_01_0104 - 781471-781888,781994-782101,782195-782511                 27   6.7  
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684...    27   6.7  
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757     27   6.7  
03_05_0165 + 21435948-21436144,21436234-21436318,21436690-214367...    27   8.8  
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575...    27   8.8  

>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 275 KNILEKGFDTTGTGFKSIE--SWWYKSRLGFP 364
           +NI   GF+   +  +SIE  S+WY SRL +P
Sbjct: 230 RNIANGGFNYVKSNERSIEFYSFWYSSRLRYP 261


>10_07_0193 - 13954819-13954950,13955340-13955375
          Length = 55

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 405 GKPPRVPRGNRSLCGKPRRLLYH 337
           G+ PR+PR    LC  P R +YH
Sbjct: 19  GRLPRLPRHQEFLCFHPHRRVYH 41


>05_07_0291 -
           29020032-29020660,29020747-29020817,29021020-29021194,
           29021451-29021571,29021686-29022036
          Length = 448

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 471 DISIDGKTIPVLTGVTMTNIW 409
           D S D   +PV+ GVT+ N+W
Sbjct: 360 DASYDPSKLPVVDGVTIKNVW 380


>11_01_0104 - 781471-781888,781994-782101,782195-782511
          Length = 280

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 131 MGRLMSINDKRLDMLEIDSFVYKLDT---GKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 301
           +G ++S +DK + MLE+     KL     GK    + S++ H + E+   + +   K  +
Sbjct: 51  LGDILSCSDKAISMLELGGDTKKLTNLVGGKRKGDKHSMDNHNLEEEAKESVSKRRKNAE 110

Query: 302 TTGT 313
            TG+
Sbjct: 111 HTGS 114


>04_04_1249 -
           32067644-32067787,32068245-32068346,32068415-32068438,
           32068439-32068543,32068625-32068729,32068885-32068966,
           32069254-32069456,32069534-32069692,32070045-32070154,
           32070264-32070405,32070544-32070690,32070773-32070847,
           32070923-32071132,32071223-32071426,32071514-32071633,
           32071743-32071852,32072033-32072177,32072266-32072499,
           32072611-32072646
          Length = 818

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 312 VPVVSKPFSNMFLVHGLCSITPCISSELRTMLFLPVS 202
           VP  +   + +  V  LC   PC+  + +T++F+ +S
Sbjct: 717 VPFRNSKLTYLLQVSDLCKWMPCLGGDSKTLMFVNIS 753


>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
          Length = 397

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 424 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALETCSS 305
           D ++ E+    G  R +KPV  + AT  PP+  A    S+
Sbjct: 113 DSKYCEKHMHRGKNRSRKPVEMSLATPPPPSSSATSAASN 152


>03_05_0165 +
           21435948-21436144,21436234-21436318,21436690-21436768,
           21436892-21437005,21437249-21437361,21437570-21437677,
           21437760-21437879
          Length = 271

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 165 LTCSKSIASSINSTLVRTTSSAARSRCTA 251
           +TC +S +SS ++ +VRT ++AA +  TA
Sbjct: 30  ITCHRSSSSSSSARVVRTGAAAAPAAATA 58


>03_02_0124 -
           5749183-5749773,5750628-5751160,5751191-5753035,
           5753632-5753820,5753911-5754013,5754087-5754269,
           5754392-5754484,5755031-5755219,5756133-5756327
          Length = 1306

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 321 LKPVPVVSKPFSNMFLVHGLCSITPCISSELRTMLFLP 208
           + P  ++  P+SNM L+HG   ++P ++  ++   F P
Sbjct: 660 IPPTSLIGAPWSNMHLIHGY--VSPPMAHYVQNHTFAP 695


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,430,796
Number of Sequences: 37544
Number of extensions: 264176
Number of successful extensions: 844
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)