Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E18
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   1.7  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   2.2  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    26   3.0  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   3.0  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   5.2  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   5.2  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   9.0  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 6   YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL---AMCSVQ 176
           Y+    ++  ++  + ++R L L +T  +   +C K+  + I  DL+  SL   A   +Q
Sbjct: 206 YKVTTVHKSYQRFATLLRRHL-LDKTAKRYHDLCEKRPYKYITTDLLSPSLTCFASDILQ 264

Query: 177 HLNHSTSTPSCPVRLTFT 230
            +   TS+ S PV L  T
Sbjct: 265 TVPEYTSSQSSPVLLPAT 282


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 319 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 182
           I  Q  L+ +  TH NPV    EC +S+C L   K  G E  L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 245 DPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFFD 394
           +P F Q Y  IVG I + K + + +P+ K     + I + V+E  VT+ D
Sbjct: 6   EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 177 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYXTGLWVTLT 293
           HL  S STPS    LTF  T  +  T H       LW  L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 143 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 247
           Y  +ARH L    + FD HTF  +   FY T  RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/78 (21%), Positives = 28/78 (35%)
 Frame = +3

Query: 9    RKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNH 188
            RK       R+ ++ +   + L     +   IC     Q  I     L  + C    L H
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKH 1122

Query: 189  STSTPSCPVRLTFTKPHF 242
            S+S P C  +L     ++
Sbjct: 1123 SSSCPMCKTKLNKNNAYY 1140


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 56  EKAINFVGNYWQENADLYEEEVTKDYQRSYEIVARHVLG 172
           +K +N   N W     L+E+E+  + +  +++ AR V G
Sbjct: 131 QKILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQG 169


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 63  QLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTP-SCPVRL 221
           +L  S TI    P+C++ K +  +N    L+L+   +  L   TS P  CP++L
Sbjct: 228 ELNASVTISG-IPVCIRSKEKMFLNPDCALTLSFICI-FLAQYTSIPLPCPLQL 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,249
Number of Sequences: 5004
Number of extensions: 40873
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)