Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E18
(522 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 1.8
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 2.3
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 7.1
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 27 9.4
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 215 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFFD 394
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 395 YSQ 403
Y Q
Sbjct: 240 YGQ 242
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 156 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 248
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 29.5 bits (63), Expect = 1.8
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +3
Query: 255 SISYXTGLWVTLTHSSIT*SLILKRNFISSAXKSMMLSLRN*SHS-LTIANLMPLTVYS* 431
++++ T + +TLTHS++T + N S L+ N +HS LT + L LT+
Sbjct: 1 TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTLTYS 60
Query: 432 PKKRLRLVTHT-TSRFVNHDSTTSLSVLPST 521
L + T T + H + T L++ ST
Sbjct: 61 TLTHLTITYSTITHSTLTHLTLTHLTLTYST 91
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/97 (24%), Positives = 40/97 (41%)
Frame = +3
Query: 177 HLNHSTSTPSCPVRLTFTKPHFETLHSISYXTGLWVTLTHSSIT*SLILKRNFISSAXKS 356
+L HST T S L T T ++++ T + TLTH +IT S I
Sbjct: 26 NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 357 MMLSLRN*SHSLTIANLMPLTVYS*PKKRLRLVTHTT 467
+ L+ +HS + + + + +TH+T
Sbjct: 85 LTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121
Score = 28.7 bits (61), Expect = 3.1
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 141 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYXTGLWVTLTHSSIT*S 314
L L+L ++ HL +ST T S LT T H +++Y T TLTHS++T S
Sbjct: 52 LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105
Query: 315 LILKRNFISSAXKSMMLSLRN*SH 386
+ S L+ N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +2
Query: 5 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 136
L+KGKF+ S K ID E+ F+G+ W ++ DL +++E K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 324 KRNFISSAXKSMMLSLRN*SHSLTIANLMPLT--VYS*PKKRLRLVTHTTSRFVNHDSTT 497
K F++ K +MLS+R+ +SLT+ +++P VY K ++ T T S V+ ++
Sbjct: 3076 KDEFLAMESKKLMLSVRDRKNSLTLYHVIPKDSGVYKCVLKN-KVGTATKSFTVDVEAKK 3134
Query: 498 SLSVLP 515
S ++P
Sbjct: 3135 SKGIIP 3140
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 20 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 160
FE Y ++ DEKA ++ Y ++ A + E +RSY + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 2 SLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 139
+LQ+G S K+++ A+ G+ Q++ ++ E E +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,586,431
Number of Sequences: 59808
Number of extensions: 301426
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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