Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E17
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 29 0.43
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 27 1.7
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 1.7
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 4.0
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 4.0
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 5.3
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 7.0
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 7.0
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 25 7.0
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 9.3
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 24 9.3
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 0.43
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +3
Query: 99 STQCLWSARK--RVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 251
+T+ +W + L + + + YYK+ K Y +AN D K VE
Sbjct: 77 ATRAVWEMTDPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 26.6 bits (56), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 123 RKRVLSLFQDVDQVNVDDEY 182
R+R+ SL ++++ N+DDEY
Sbjct: 189 RERLRSLADEIEEENIDDEY 208
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 1.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 282 DNRFCTISRILQQLSYWCSYRCW 214
D + T++++ + LS W YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 147 QDVDQVNVDDEYYKIGKDYDVEANIDN 227
Q+V Q+N +DEY + + D EA IDN
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 59 VVSPKTYHFKTK-DVDAVFVERQKKGFI 139
V+ PKT+H+K + F + QKK FI
Sbjct: 234 VIEPKTFHYKNGISISMKFDKDQKKLFI 261
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 4.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 120 ARKRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLY-RIGY 281
AR LS+ +QV D E+Y+I K+ E D+ + E LK+Y R+ Y
Sbjct: 595 ARSMELSIRHAFEQV--DREWYEIHKEAKSEIEKDSSKPTEDQESKLKVYGRVAY 647
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 5.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 210 EANIDNYTNKKAVEEFLKLYRIGYLPK 290
E + N+T ++A+EE KL LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 24.6 bits (51), Expect = 7.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 117 SARKRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 263
S RK++L+L + D + V+DE Y + D +++ K FLK
Sbjct: 225 SRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 7.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -1
Query: 150 LGKGIKPFFWRSTNTASTS 94
+ +G++P FWR+ N + S
Sbjct: 319 INEGVRPIFWRTRNESYVS 337
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 446 IICVQELSLI*GHTSESGTLVEGFKVFSIVEQVEKSNS 333
+ICVQEL + + +VEGF + ++ K S
Sbjct: 37 VICVQELKMQKDSFPQQYAVVEGFDSYFTFPKIRKGYS 74
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 24.2 bits (50), Expect = 9.3
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 72 KRITSR---QKMSTQCLWSARKRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTN 236
K ITS +K++T + A+K +S + + N+ E + + +D+ +ID+Y N
Sbjct: 323 KMITSNHAEEKLTTIPITEAKKESVSNTALIARKNIIRERKYLSRMFDIFEHIDSYFN 380
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 24.2 bits (50), Expect = 9.3
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +3
Query: 147 QDVDQVNVDDEYYKIGK 197
Q+ + N+DDEY+++G+
Sbjct: 65 QEETETNLDDEYHRLGE 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,825
Number of Sequences: 5004
Number of extensions: 32834
Number of successful extensions: 97
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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