Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E17
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182... 33 0.10
02_05_0627 + 30463452-30463774,30463841-30463956,30464125-304643... 29 1.3
04_01_0046 + 510721-510790,511048-511121,511459-511729,511865-51... 29 2.3
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641... 28 3.9
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 27 6.9
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 6.9
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 27 9.1
07_03_0475 + 18544637-18544772,18544925-18545031,18545114-185452... 27 9.1
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 27 9.1
>07_03_1654 -
28416487-28416548,28416791-28416824,28418156-28418212,
28418401-28418450,28418968-28419025,28419136-28419182,
28419278-28419377,28419446-28419586,28419715-28419780,
28420024-28420118,28420440-28420629
Length = 299
Score = 33.1 bits (72), Expect = 0.10
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 54 PVWCHRKRITSRQKMSTQCLWSARKRVLSLFQDVDQVNVDDEYYKIGKDYDVEANI 221
P C+ +R+ + +MS + WS V +L D+ + V+D +YK G+ D++ I
Sbjct: 53 PASCYFRRVLAEGRMSRR--WSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKI 106
>02_05_0627 +
30463452-30463774,30463841-30463956,30464125-30464371,
30464458-30464555,30465216-30465284,30465752-30465820,
30465913-30466028
Length = 345
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -1
Query: 438 RTRTVPHLGPHERKRHSCRRFQSL*HSRTSGKEQ*PLPLA 319
+T ++PHL PH R+R RRF L + S PLP A
Sbjct: 28 QTVSIPHLSPHTRRRRQ-RRFLRLASAAASSPP--PLPAA 64
>04_01_0046 +
510721-510790,511048-511121,511459-511729,511865-512243,
512550-512771,513130-513259,514311-514367,514756-515046
Length = 497
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 71 KTYHFKTKDVDAVFVERQKKGFIPF 145
K H +T+DVDA +R G IPF
Sbjct: 7 KDIHIQTEDVDAFIKDRGSMGVIPF 31
>06_03_0499 +
21461608-21463427,21463517-21463627,21463867-21464143,
21464265-21464353,21464508-21464595,21464698-21464907,
21464985-21465110,21465429-21465620,21466532-21467188
Length = 1189
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 407 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 261
+S +G + FK+ +++E K + L EDG++++ K DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 360 YAKDFETFYKSAAFARVALNEGQFLYAYY 446
Y KD FY + + + EG+FL ++Y
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFY 725
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 335 SLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 219
S FP + E GE+ V GK+ D + SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 360 SRTSGKEQ*PLPLAFGRRWRTHSTWED 280
SRT G P P RRWR H +D
Sbjct: 404 SRTRGARNSPPPPTSARRWRPHPPADD 430
>07_03_0475 +
18544637-18544772,18544925-18545031,18545114-18545295,
18545467-18545599,18545708-18545920
Length = 256
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 228 YTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIAL 344
Y NK V K+ P Y EF I+YQ+ ++ IA+
Sbjct: 147 YPNKNIV---FKITESSNFPNYLEFEIWYQQGNQDIIAV 182
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +3
Query: 123 RKRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 254
+KR LSL Q D++ VD + + + ++++ + NY KK++ +
Sbjct: 341 KKRNLSLSQHDDEIEVDIDSFDVETLWELDRFVTNY--KKSISK 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,032,553
Number of Sequences: 37544
Number of extensions: 204260
Number of successful extensions: 524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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