Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E17
(447 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 1.2
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 29 2.0
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 29 2.0
AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical... 29 2.0
AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical ... 29 2.0
U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 28 2.7
AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 27 4.7
AC024804-8|AAF60745.1| 319|Caenorhabditis elegans Hypothetical ... 27 4.7
U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine rece... 27 6.2
AC024804-7|AAF60744.1| 322|Caenorhabditis elegans Hypothetical ... 27 6.2
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 27 8.2
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 27 8.2
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 27 8.2
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 27 8.2
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +3
Query: 138 SLFQDVDQVNVDDEYYKIGKDYDVEANIDNY----TNKKAVEEFLKLYR--IGYLPKY 293
S+ DV ++++DD+Y+ +G +D + D + AV F L+R +LP Y
Sbjct: 2542 SMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 28.7 bits (61), Expect = 2.0
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 126 KRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFS 305
K+V S F + + D YY + + + V +TN V+E +K Y P + ++S
Sbjct: 53 KKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWS 101
Query: 306 IFYQKLREEAIALFHLFYYAKD 371
EEAIA FH +Y K+
Sbjct: 102 TL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 28.7 bits (61), Expect = 2.0
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 126 KRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFS 305
K+V S F + + D YY + + + V +TN V+E +K Y P + ++S
Sbjct: 53 KKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWS 101
Query: 306 IFYQKLREEAIALFHLFYYAKD 371
EEAIA FH +Y K+
Sbjct: 102 TL-----EEAIAYFHKYYEGKE 118
>AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical
protein Y62E10A.16 protein.
Length = 496
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 331 RLLLFSTCSTMLKTLKPSTRVPLSLV 408
R+ F TCS +KT+K +PLS+V
Sbjct: 290 RIEQFLTCSETIKTVKSDALIPLSIV 315
>AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical
protein F37B4.7 protein.
Length = 424
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 IFYQKLREEAIALFHLFYYAKDFETFYKSA-AFARVALNEGQFL 434
+FY IA F + Y K +T YKSA AF R AL G+FL
Sbjct: 101 VFYGWATATEIAYF-AYIYVKVPKTEYKSATAFTRAALLVGRFL 143
>U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical
protein ZC513.3 protein.
Length = 619
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 306 WRTHSTWEDN-RFCTISRILQQLSYWCSYRC 217
WRT + E + +F +SRIL+Q + W S C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572
>AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical
protein F40G9.12 protein.
Length = 230
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 4 NYEDCPSSSGAHCPRAIQCGVT 69
NYE +SG HCPR + CG T
Sbjct: 25 NYE----TSGDHCPRVLSCGHT 42
>AC024804-8|AAF60745.1| 319|Caenorhabditis elegans Hypothetical
protein Y51H7BR.1 protein.
Length = 319
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 2 QTMKTVLVLAGLIALVQSSVVSPKTYHF 85
+T+K V++ G I L+ +S++S KT HF
Sbjct: 12 KTLKNVILQMGHIELICTSLLSNKTKHF 39
>U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine
receptor, class v protein7 protein.
Length = 349
Score = 27.1 bits (57), Expect = 6.2
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 404 SESGTLVEGFKVF-SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGV 228
+ + TL E F S+V V S F +L+ E+++L + ++V F+ F IG+
Sbjct: 2 ASNATLPEWFDPLESVVSTVFMLGS-FVTILLYFVEILILVTLRNTVYKGMFYQIFTIGI 60
Query: 227 VIDV 216
+IDV
Sbjct: 61 IIDV 64
>AC024804-7|AAF60744.1| 322|Caenorhabditis elegans Hypothetical
protein Y51H7BR.2 protein.
Length = 322
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 2 QTMKTVLVLAGLIALVQSSVVSPKTYHF 85
+T+K V++ G I L+ +S++S KT HF
Sbjct: 12 KTLKNVILHMGHIELICASLLSNKTKHF 39
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 216 NIDNYTNKKAVEEFLKLYR 272
++DN T+K+ E++LKL+R
Sbjct: 1118 SVDNLTDKRIKEDYLKLFR 1136
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 216 NIDNYTNKKAVEEFLKLYR 272
++DN T+K+ E++LKL+R
Sbjct: 1118 SVDNLTDKRIKEDYLKLFR 1136
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 216 NIDNYTNKKAVEEFLKLYR 272
++DN T+K+ E++LKL+R
Sbjct: 1118 SVDNLTDKRIKEDYLKLFR 1136
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 216 NIDNYTNKKAVEEFLKLYR 272
++DN T+K+ E++LKL+R
Sbjct: 1118 SVDNLTDKRIKEDYLKLFR 1136
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 26.6 bits (56), Expect = 8.2
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Frame = +3
Query: 42 PSCNPVWCHRKRITSRQKMSTQCLWSARKRVLSLFQDVDQVNVDDEYYKIGKD-----YD 206
P C+ V ++ + +C RK +VD + DE Y++ K Y
Sbjct: 1203 PDCDDVDTNKMSEEEYRAYKKRC-GKERKTPKPDCDEVDVNKLSDEEYRLYKKRCMSTYT 1261
Query: 207 VEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALF 347
E + N K E+ +Y+I LPK E +K E + +F
Sbjct: 1262 PEDDCSNIRVKDLTEKEYNIYKIWDLPKLTEIFKNLKKKLEHSNPMF 1308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,676,659
Number of Sequences: 27780
Number of extensions: 183712
Number of successful extensions: 561
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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