Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E16
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0041 - 14374684-14377339,14377371-14378233                       29   2.6  
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020     29   2.6  
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784...    28   4.5  

>10_08_0041 - 14374684-14377339,14377371-14378233
          Length = 1172

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -2

Query: 566 LNHFDEDGHGACLAKV-TXTPQ-FWAQNSLPWFL*VLXSL--PHTGLYSGVEMQFSA 408
           L H   DG    +  + T T Q  W +N +  F  VL +L  PH  LY  V+M+F+A
Sbjct: 628 LRHTGVDGKQNLVYHLATATVQSVWRENCMEQFKLVLEALHQPHRHLYIAVDMEFAA 684


>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
          Length = 722

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 500 WAQNSLPWFL*VLXSL--PHTGLYSGVEMQFSA 408
           W +N +  F  VL +L  PH  LY  V+M+F+A
Sbjct: 333 WQENCMEQFKLVLEALHQPHRNLYIAVDMEFTA 365


>07_03_1769 +
           29377784-29377878,29377993-29378180,29378340-29378472,
           29378580-29378715,29378996-29379072,29379162-29380830,
           29380935-29381018,29381120-29381224,29381302-29381358
          Length = 847

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 566 LNHFDEDGHGACLAKVTXTPQFWAQNS 486
           L+ +D DG GACL + T  P F+  +S
Sbjct: 137 LDKYDADGEGACLKRYT-NPSFFTSHS 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,987,118
Number of Sequences: 37544
Number of extensions: 330932
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)