Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E15
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   173   8e-45
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    98   5e-22
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    91   5e-20
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    86   3e-18
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    29   0.25 
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.3  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   3.1  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   4.1  
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   5.4  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.1  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    24   9.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  173 bits (422), Expect = 8e-45
 Identities = 73/98 (74%), Positives = 86/98 (87%)
 Frame = +2

Query: 65  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 244
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 245 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 358
           PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAG
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAG 98



 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +1

Query: 364 WAKDTNTEGAELVDSVLDVVRKES 435
           WAK   TEGAEL D+VLDVVR+E+
Sbjct: 101 WAKGHYTEGAELADAVLDVVRREA 124


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 98.3 bits (234), Expect = 5e-22
 Identities = 39/97 (40%), Positives = 67/97 (69%)
 Frame = +2

Query: 68  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 247
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 248 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 358
           RAIL+DLEP  ++++ S  +G ++ P+N +  ++G G
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGG 99


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 91.5 bits (217), Expect = 5e-20
 Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
 Frame = +2

Query: 65  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 238
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 239 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGTTGPR 373
           YVPR+I VDLEP  +D VR+GP+  +F P+  + G+  A     R
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYAR 105



 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 298 GTFRTDIPP*QLCFRTVRRRYNWAKDTNTEGAELVDSVLDVVRK 429
           G +R    P QL         N+A+   T G ELVD V D +R+
Sbjct: 81  GPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRR 124


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
 Frame = +2

Query: 65  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 226
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 227 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGTTGPR 373
             GK+VPR+I VDLEP  +D VR+GP+  +F P+  V G+  A     R
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYAR 109



 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 361 NWAKDTNTEGAELVDSVLDVVRK 429
           N+A+   T G E++DSVL+ +R+
Sbjct: 106 NYARGHYTVGKEMIDSVLERIRR 128


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 307 RTDIPP*QLCFRTVRRRYNWAKDT 378
           R D+P  +L  +T+R ++NWA DT
Sbjct: 785 REDVPIEKLFSKTIRDKFNWAADT 808


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 104 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 205
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 299 GPFGQIFRPDNFVFGQSG 352
           GP+G +F P  F+F  +G
Sbjct: 157 GPYGTMFLPQQFIFDSNG 174


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 357 PAPDCPKTKLSGRNICPKGPERTESMVPGSRS 262
           P+   PK  L  R I P GPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 302 PFGQIFRPDNFVFGQSGAGTTGPRTLTQKALS*STQFWT*SEKNPES 442
           P G++ +  +FVF ++  GTT P+   +K L+   Q     E   ES
Sbjct: 5   PLGKMIQDGDFVFQKAKKGTTIPKA-RKKTLTKDLQVQVAKELEQES 50


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 324 GRNICPKGPERTESMVPGSRSTRMARGTYLP 232
           G NI    PER +      +S RMAR   LP
Sbjct: 106 GNNINYPTPERLQKSSASRKSGRMARSQELP 136


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 352 RRYNWAKDTNTEGAELVDS 408
           R   WAKDTN  G +L+ S
Sbjct: 17  RNSKWAKDTNRLGFKLLSS 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,432
Number of Sequences: 5004
Number of extensions: 31455
Number of successful extensions: 92
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)