Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E15
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.29 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 17/80 (21%), Positives = 30/80 (37%)
 Frame = -2

Query: 384 CVSVLGPVVPAPDCPKTKLSGRNICPKGPERTESMVPGSRSTRMARGTYLPPEASL**TL 205
           C+S+L   V    CP+  ++  +       R  +++  +  T +A    +     L    
Sbjct: 178 CISILAIKVYYISCPEISVNFAHFPATPTGREVALIEQTIGTCVANAVVIEQPTFL---- 233

Query: 204 MRSSCKSESPWYAPVGSMPC 145
               CK +  WY P G   C
Sbjct: 234 ----CKGDGKWYLPSGGCHC 249


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 179 DSDLQLERINVYYNEASGGKYV 244
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,199
Number of Sequences: 438
Number of extensions: 2312
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)