Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E13
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...   108   7e-25
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    56   4e-09
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   8.8  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 796

 Score =  108 bits (259), Expect = 7e-25
 Identities = 58/205 (28%), Positives = 104/205 (50%)
 Frame = +2

Query: 2    LNDKELNIISYSLLVSVLEYQTAVMRGDFETADRVLPTVPHDQRTRVAHFLEKQGFKQQA 181
            L D+++N++SYS  ++++EYQ+ V++GD E A  +L  +    R R++ FL + G+K+ A
Sbjct: 575  LTDRDMNVVSYSFNLAIIEYQSLVLKGDLEAAQGLLEQISETDRPRLSDFLSRLGYKEAA 634

Query: 182  LAVSTEPEHQFELALSLGELHXXXXXXXXXXXXXXXXXXXXXARWSKLGTXXXXXXDTEL 361
            L +S +   +FELAL    L                       +W  LG       D  L
Sbjct: 635  LELSGDSVQRFELALDAQRL---------DIASQIAQELDDPLKWRSLGDAALNAWDFVL 685

Query: 362  TKICYQNARDYSALLLFAVSIGDKELLQQVAQVSSEHGDDXIAFVAYFTLNELDSCLELL 541
             + C++  +DY +L+L   +  + E L++++Q++     +  AF+  +  N+   C+ +L
Sbjct: 686  AQECFEKGKDYGSLVLLYTATNNHEGLKELSQLTKSTKINNTAFICSWLTNQPAECVNIL 745

Query: 542  ISRGTISEAALFARSYVPSKVCEVV 616
             S     EA LFA +Y P +V  V+
Sbjct: 746  TSTQRYPEANLFAATYCPDEVKNVL 770


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 43/187 (22%), Positives = 83/187 (44%)
 Frame = +2

Query: 26   ISYSLLVSVLEYQTAVMRGDFETADRVLPTVPHDQRTRVAHFLEKQGFKQQALAVSTEPE 205
            +S+ +  +   ++ A++R D+E    ++       +  +A +L+K+G+ + AL    +P 
Sbjct: 595  VSFEIDPTEYLFKLALLRKDYEQVLHLIQNSNLVGQAIIA-YLQKKGYPEIALQFVEDPS 653

Query: 206  HQFELALSLGELHXXXXXXXXXXXXXXXXXXXXXARWSKLGTXXXXXXDTELTKICYQNA 385
             +FELAL  G L                        WS+L +      + ++ +I +Q  
Sbjct: 654  TRFELALECGNLETALELARTIDRPEV---------WSRLASDAMSYGNHKIAEITFQKL 704

Query: 386  RDYSALLLFAVSIGDKELLQQVAQVSSEHGDDXIAFVAYFTLNELDSCLELLISRGTISE 565
            R +  L    +  G+ E LQ++A ++ +  D    F     LNE++S + +L   G    
Sbjct: 705  RYFEKLSFLYLITGNAEKLQKMAIIAEKRNDTLSLFQNSLYLNEVESRINILEQAGMYPI 764

Query: 566  AALFARS 586
            A L A+S
Sbjct: 765  AYLTAKS 771


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 195 VDTAKACCLKPCFSRKCATLVRWSWGTVGRT 103
           VD  K   LK  +  +      WS+GT GRT
Sbjct: 282 VDLTKIVALKKKYKYRLILDETWSFGTCGRT 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,711
Number of Sequences: 5004
Number of extensions: 39961
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)