Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E13
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 167 6e-42
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 89 3e-18
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 89 3e-18
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 29 2.3
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 29 2.3
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843... 29 2.3
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 29 3.0
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657... 28 5.2
02_02_0295 - 8658442-8658909,8659041-8659273,8661052-8661112 28 5.2
>06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 167 bits (406), Expect = 6e-42
Identities = 81/207 (39%), Positives = 127/207 (61%)
Frame = +2
Query: 2 LNDKELNIISYSLLVSVLEYQTAVMRGDFETADRVLPTVPHDQRTRVAHFLEKQGFKQQA 181
L DKE N++ Y+LL+S++EY+T VMRGD E A+ +LP++P Q VAHFLE +G ++A
Sbjct: 571 LIDKEFNVMGYTLLLSLIEYKTLVMRGDIERANDILPSIPKAQYNNVAHFLESRGMLEEA 630
Query: 182 LAVSTEPEHQFELALSLGELHXXXXXXXXXXXXXXXXXXXXXARWSKLGTXXXXXXDTEL 361
L ++T+ +++F+LA+ LG+L ++W +LG ++
Sbjct: 631 LEIATDADYRFDLAVQLGKLE---------VAKAIAMEAQSESKWKQLGELAMSTGKLDM 681
Query: 362 TKICYQNARDYSALLLFAVSIGDKELLQQVAQVSSEHGDDXIAFVAYFTLNELDSCLELL 541
+ C A+D S LLL S+GD E ++++A + EHG + +AF+ F L +L+ C++LL
Sbjct: 682 AEECLVQAKDLSGLLLLYSSLGDAEGIEKLASQAKEHGKNNVAFLCLFMLGKLEDCIQLL 741
Query: 542 ISRGTISEAALFARSYVPSKVCEVVKL 622
I I EAAL ARSY+PSKV E+V +
Sbjct: 742 IDSNRIPEAALMARSYLPSKVSEIVAI 768
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 88.6 bits (210), Expect = 3e-18
Identities = 42/105 (40%), Positives = 64/105 (60%)
Frame = +2
Query: 308 ARWSKLGTXXXXXXDTELTKICYQNARDYSALLLFAVSIGDKELLQQVAQVSSEHGDDXI 487
++W +LG ++ + C +A D S LLL S+GD E L ++ ++ E G + +
Sbjct: 574 SKWRQLGELAMSTGKLDMAEECLLHAMDLSGLLLLYSSLGDAEGLTKLTSMAKEQGKNNV 633
Query: 488 AFVAYFTLNELDSCLELLISRGTISEAALFARSYVPSKVCEVVKL 622
AF+ +F L +L+ CL+LLI I EAAL +RSY+PSKV E+V L
Sbjct: 634 AFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTL 678
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 88.6 bits (210), Expect = 3e-18
Identities = 42/105 (40%), Positives = 64/105 (60%)
Frame = +2
Query: 308 ARWSKLGTXXXXXXDTELTKICYQNARDYSALLLFAVSIGDKELLQQVAQVSSEHGDDXI 487
++W +LG ++ + C +A D S LLL S+GD E L ++ ++ E G + +
Sbjct: 569 SKWRQLGELAMSTGKLDMAEECLLHAMDLSGLLLLYSSLGDAEGLTKLTSMAKEQGKNNV 628
Query: 488 AFVAYFTLNELDSCLELLISRGTISEAALFARSYVPSKVCEVVKL 622
AF+ +F L +L+ CL+LLI I EAAL +RSY+PSKV E+V L
Sbjct: 629 AFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTL 673
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 29.5 bits (63), Expect = 2.3
Identities = 28/173 (16%), Positives = 69/173 (39%), Gaps = 2/173 (1%)
Frame = +2
Query: 98 DRVLPTVPHDQRT--RVAHFLEKQGFKQQALAVSTEPEHQFELALSLGELHXXXXXXXXX 271
D V+ + + Q V +L+++GF + AL + + +F LAL G +
Sbjct: 611 DHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNIQIAVASAKEI 670
Query: 272 XXXXXXXXXXXXARWSKLGTXXXXXXDTELTKICYQNARDYSALLLFAVSIGDKELLQQV 451
W +LG + + + YQ +++ L + G + + +
Sbjct: 671 DDKD---------HWYRLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGFM 721
Query: 452 AQVSSEHGDDXIAFVAYFTLNELDSCLELLISRGTISEAALFARSYVPSKVCE 610
+++ ++ + F L + +E+L + G + A + A ++ +++ +
Sbjct: 722 CKIAGQNNNLMGQFHNALYLGDAMKRVEILENAGQLPLAYITAATHGLTEIAD 774
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 29.5 bits (63), Expect = 2.3
Identities = 28/173 (16%), Positives = 69/173 (39%), Gaps = 2/173 (1%)
Frame = +2
Query: 98 DRVLPTVPHDQRT--RVAHFLEKQGFKQQALAVSTEPEHQFELALSLGELHXXXXXXXXX 271
D V+ + + Q V +L+++GF + AL + + +F LAL G +
Sbjct: 611 DHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNIQIAVASAKEI 670
Query: 272 XXXXXXXXXXXXARWSKLGTXXXXXXDTELTKICYQNARDYSALLLFAVSIGDKELLQQV 451
W +LG + + + YQ +++ L + G + + +
Sbjct: 671 DDKD---------HWYRLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGFM 721
Query: 452 AQVSSEHGDDXIAFVAYFTLNELDSCLELLISRGTISEAALFARSYVPSKVCE 610
+++ ++ + F L + +E+L + G + A + A ++ +++ +
Sbjct: 722 CKIAGQNNNLMGQFHNALYLGDAMKRVEILENAGQLPLAYITATTHGLTEIAD 774
>02_02_0270 +
8431503-8431830,8431961-8432149,8434288-8434412,
8434527-8434703,8434798-8434871,8434978-8435713
Length = 542
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 437 VLYHQY*QQRAIKRYNPWHFDSISSSVQYRPQRLQLFQ 324
+L H Q R NPWH S +YR RLQ F+
Sbjct: 17 LLVHDSMAQLFYPRTNPWHSPHQGSFSEYRFDRLQAFE 54
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 29.1 bits (62), Expect = 3.0
Identities = 28/173 (16%), Positives = 69/173 (39%), Gaps = 2/173 (1%)
Frame = +2
Query: 98 DRVLPTVPHDQRT--RVAHFLEKQGFKQQALAVSTEPEHQFELALSLGELHXXXXXXXXX 271
D V+ + + Q V +L+++GF + AL + + +F LAL G +
Sbjct: 611 DHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNIQIAVASAKEI 670
Query: 272 XXXXXXXXXXXXARWSKLGTXXXXXXDTELTKICYQNARDYSALLLFAVSIGDKELLQQV 451
W +LG + + + YQ +++ L + G + + +
Sbjct: 671 DDKD---------HWYRLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGFM 721
Query: 452 AQVSSEHGDDXIAFVAYFTLNELDSCLELLISRGTISEAALFARSYVPSKVCE 610
+++ ++ + F L + +E+L + G + A + A ++ +++ +
Sbjct: 722 CKIAGQNNNLMGQFHNALYLGDALKRVEILENAGQLPLAYITATTHGLTEIAD 774
>02_05_1213 -
34963971-34964658,34965030-34965270,34965347-34965736,
34966515-34966781,34966881-34967249,34967931-34968014,
34968113-34968226,34969952-34970018
Length = 739
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +2
Query: 14 ELNIISYSLLVSVLEYQTAVMRGDFETADRV-----LPTVPHDQRTRVAHFL 154
+L++ Y L + + E + V G F +V +P++ DQ+TRV +L
Sbjct: 118 DLDVAPYLLFMRIAELEVEVAAGTFLKQSQVKIMAAIPSIQDDQKTRVTIYL 169
>02_02_0295 - 8658442-8658909,8659041-8659273,8661052-8661112
Length = 253
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 529 TRVQFIQSEVSHKRYVIVAMFTRHLSDLL*E 437
TR+Q I EVSH RY++ HL D++ E
Sbjct: 185 TRLQVIMKEVSHLRYILKE--APHLGDIIKE 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,484,134
Number of Sequences: 37544
Number of extensions: 258728
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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