Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E13
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)              202   2e-52
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 29   3.0  
SB_26644| Best HMM Match : Collagen (HMM E-Value=0)                    29   3.0  
SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 29   3.0  
SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)                   29   4.0  
SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)                   28   5.3  
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   28   5.3  
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)                     28   7.0  

>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score =  202 bits (493), Expect = 2e-52
 Identities = 101/207 (48%), Positives = 132/207 (63%)
 Frame = +2

Query: 2    LNDKELNIISYSLLVSVLEYQTAVMRGDFETADRVLPTVPHDQRTRVAHFLEKQGFKQQA 181
            L DK++ ++SYSLL+SVLEYQTAVMR DFETA +VLPT+P DQR RVAHFLEKQGFKQQA
Sbjct: 472  LADKDMGVVSYSLLLSVLEYQTAVMRQDFETAKQVLPTIPRDQRNRVAHFLEKQGFKQQA 531

Query: 182  LAVSTEPEHQFELALSLGELHXXXXXXXXXXXXXXXXXXXXXARWSKLGTXXXXXXDTEL 361
            LAVS +PEH+FELA+ LGEL                       +W +L          +L
Sbjct: 532  LAVSCDPEHRFELAIQLGELR---------TAYEIAMEAEVERKWKQLAELAISKCQFQL 582

Query: 362  TKICYQNARDYSALLLFAVSIGDKELLQQVAQVSSEHGDDXIAFVAYFTLNELDSCLELL 541
             + C  +A+D+  LLL A S GD +++ ++A  + + G + +AF+AYF L  L+ CL+LL
Sbjct: 583  AQECLHHAQDFGGLLLLATSSGDADMITRLAVTAKDKGKNNVAFLAYFMLGRLEECLDLL 642

Query: 542  ISRGTISEAALFARSYVPSKVCEVVKL 622
               G   EAA  AR+Y PS V  +VKL
Sbjct: 643  CETGRYPEAAFMARTYAPSHVSRIVKL 669


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 243 CNSPSDRASSNWCSGSVDTAKACCLKPCFSRKCATLVRWS 124
           C++PS +     CSG  +  + C  KPC      TL  WS
Sbjct: 646 CSNPSPKYGGKNCSGVKNKRRPCAQKPCLVN--GTLTNWS 683


>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 512

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 243 CNSPSDRASSNWCSGSVDTAKACCLKPCFSRKCATLVRWSWGTVG 109
           C++P  R     C G         +KPC  RKC   V  +WG  G
Sbjct: 297 CDNPKRRFGGEKCEGDRKD-----VKPCQIRKCPDAVNGNWGDWG 336


>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 877

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 195 VDTAKACCLKPCFSRKCATLVRWS 124
           +D AK  C  PC  RKCA + R S
Sbjct: 204 MDRAKMWCRNPCLRRKCAYIKRTS 227


>SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 468

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 243 CNSPSDRASSNWCSGSVDTAKACCLKPCFSRKCATLVRWSWGTVG 109
           C++P  R     C G         +KPC  RKC   V  +WG  G
Sbjct: 253 CDNPKRRFGGEKCEGDRKD-----VKPCQIRKCPDAVNGNWGDWG 292


>SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)
          Length = 775

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 322 TWNSCSRCGRY*TDEDMLSKCQGL*RFIALCCQY 423
           TW +C+      T   +L+  Q +   +A CC+Y
Sbjct: 450 TWKACTEVDNQATKMPVLNSLQNMVAMVAACCEY 483


>SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)
          Length = 892

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 201 GSVDTAKACCLKPCFSRKCATLVRWSWGTVGRTLSAVSKSPRITAVWYSNTDT 43
           G+++  +  CLK      CAT+      T  R+ S  SKS  +T V ++NT T
Sbjct: 46  GNLEQLQEFCLKVLNLEVCATM-----STSERSSSLKSKSKTVTLVLFNNTGT 93


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 243 CNSPSDRASSNWCSGSVDTAKACCLKPC 160
           C +PS       C+G+++  KAC   PC
Sbjct: 115 CTNPSPLFGGKDCAGAMEETKACNTHPC 142


>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
          Length = 603

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 155 RGNARPLYVGHGGQSAELYLRFRSHLASRPSGTP 54
           RG+ RP YV  G  SA++    RS + S  +  P
Sbjct: 13  RGSERPFYVASGTTSADIIAEARSAVRSLKTNRP 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,239,069
Number of Sequences: 59808
Number of extensions: 309959
Number of successful extensions: 798
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)