Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E13
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.3  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   9.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 113 TVPHDQRTRVAHFLEKQGFKQQALAVSTEP 202
           T P  Q+  + +  ++ GF+ Q   + T P
Sbjct: 78  TAPDGQQVSITYVADENGFQVQGSHIPTAP 107


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 78  RITAVWYSNTDTSNEYEI 25
           ++T +W+SN  T ++ +I
Sbjct: 402 QVTGIWHSNLTTPDDPDI 419


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 315 GRNLEQLQPLRPILN*RRYA-IKMPGIIALYCSLLSVLV 428
           G  +  +  +RP L  +    + M GIIA+Y  +++VL+
Sbjct: 37  GTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 75


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 618 FTTSHTLEGT*DLANNAASDIVPLLMRSSRHESS 517
           FT + + + +   +++ +  I P + RSS HE S
Sbjct: 37  FTVAESYDASSSNSDSLSMTIPPSIDRSSIHEES 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,670
Number of Sequences: 438
Number of extensions: 2698
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)