Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E11
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   2.7  
10_04_0013 + 7560286-7560594                                           27   6.1  
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    27   6.1  
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489...    27   6.1  
10_08_0884 - 21283761-21283877,21283965-21284016,21284119-212841...    27   8.1  
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167...    27   8.1  

>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 205 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY 348
           G  +NV  SPL + + + L  +GAG  +R ++   LG    +E  + +
Sbjct: 32  GAGRNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAF 79


>10_04_0013 + 7560286-7560594
          Length = 102

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -2

Query: 343 DWWPHYNLHHPKT-CRSPHDYLHRRLIC 263
           DWW  Y +  P     SPHD   R +IC
Sbjct: 64  DWWS-YGMEFPSAVAASPHDAATRDMIC 90


>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 55  VNMIKLYLFA-VIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSS 231
           + +I+L+  A V+ +C +R F+FF      T  G          +K+    G D N  SS
Sbjct: 50  LGLIQLWGSADVLNICKMRRFFFFGSSTASTGNGGKTPSDDDSRIKKKALDGGDSNGSSS 109


>05_07_0247 +
           28643862-28644310,28645151-28645207,28645644-28648950,
           28649069-28649144,28649356-28649426,28649524-28649589,
           28649677-28649766,28649874-28650050,28650513-28650548
          Length = 1442

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 277 GEGSRVEIDKFLGDVDYSEATNPYISLSK 363
           GE  + + D  +G+ D  E TNP   LSK
Sbjct: 540 GEDQKQKTDAAVGEEDKCEVTNPVTKLSK 568


>10_08_0884 -
           21283761-21283877,21283965-21284016,21284119-21284187,
           21284475-21284587,21284694-21284753,21284834-21285136
          Length = 237

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 133 YNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDK 306
           Y +   G  ID     + +    S +D  V S     MM++  Y S +G+G+++ + K
Sbjct: 164 YLQDEYGTTIDALEFMISRGVKRSARD--VKSDAYSAMMILERYFSSSGQGAKIVLPK 219


>05_05_0362 +
           24415257-24415481,24415585-24415835,24416659-24416755,
           24417272-24417820,24418029-24418482,24418747-24418860,
           24418940-24419023,24419499-24420067
          Length = 780

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 250 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPD-FFTMAN 405
           L LL  SGA E  R    K  GD    E    ++   +    M P+ F ++AN
Sbjct: 233 LHLLSSSGAREKKRHHTSKLTGDERVRELLEGHVKNCRVAFRMEPEIFISLAN 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,073,185
Number of Sequences: 37544
Number of extensions: 217617
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)