Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E11
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-5|AAB18317.1|  422|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U03059-1|AAA88795.1|  422|Caenorhabditis elegans ornithine decar...    26   9.5  

>U64854-5|AAB18317.1|  422|Caenorhabditis elegans Hypothetical
           protein K11C4.4 protein.
          Length = 422

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 259 LYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFFTMANK 408
           L + G G G +++I    G    +E  NP+  +++T  +   +FF   NK
Sbjct: 221 LCEIGEGLGFKMDIIDMGGGFPGAEHHNPFEKIAETIRDALDEFFPDTNK 270


>U03059-1|AAA88795.1|  422|Caenorhabditis elegans ornithine
           decarboxylase protein.
          Length = 422

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 259 LYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFFTMANK 408
           L + G G G +++I    G    +E  NP+  +++T  +   +FF   NK
Sbjct: 221 LCEIGEGLGFKMDIIDMGGGFPGAEHHNPFEKIAETIRDALDEFFPDTNK 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,503,074
Number of Sequences: 27780
Number of extensions: 188996
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)