Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E11
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36160.1 68417.m05146 no apical meristem (NAM) family protein... 28 2.2
At1g23110.1 68414.m02889 hypothetical protein 27 3.9
At4g13330.1 68417.m02083 expressed protein 27 5.2
At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to... 27 5.2
At1g70900.1 68414.m08181 expressed protein 27 5.2
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 5.2
At4g25180.1 68417.m03625 DNA-directed RNA polymerase III RPC4 fa... 26 9.0
At4g00880.1 68417.m00119 auxin-responsive family protein similar... 26 9.0
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 26 9.0
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi... 26 9.0
At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger) fa... 26 9.0
At2g02960.4 68415.m00247 zinc finger (C3HC4-type RING finger) fa... 26 9.0
At2g02960.3 68415.m00246 zinc finger (C3HC4-type RING finger) fa... 26 9.0
At2g02960.2 68415.m00245 zinc finger (C3HC4-type RING finger) fa... 26 9.0
At2g02960.1 68415.m00244 zinc finger (C3HC4-type RING finger) fa... 26 9.0
At1g76740.1 68414.m08931 expressed protein weak similarity to fi... 26 9.0
>At4g36160.1 68417.m05146 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) [Arabidopsis thaliana];
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 377
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 112 FYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVV--SSPLGVMMLMLLYKSGAGEG 285
+YFF H+ + G ++ +M +A +G+DK V S +G+ ++ YK A G
Sbjct: 69 WYFFSHKDKKYPTGTRTNRATMAGFWKA--TGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 126
Query: 286 SRVE 297
+ +
Sbjct: 127 QKTD 130
>At1g23110.1 68414.m02889 hypothetical protein
Length = 261
Score = 27.5 bits (58), Expect = 3.9
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 214 KNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFF 393
K +S +GV + LY + SR ++ K+L VDY+ I LS+ NP F
Sbjct: 120 KVYANSLIGVGIASSLYHA-----SRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFL 174
Query: 394 TMANKI 411
A+ +
Sbjct: 175 MAASAL 180
>At4g13330.1 68417.m02083 expressed protein
Length = 428
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 166 YQWRHLRLSCCTRGQRNRMLARCR 95
YQWR LR + TR +++A CR
Sbjct: 114 YQWRSLRFNDDTRQSTVKVMAACR 137
>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to gi:
3172025; identical to cDNA putative aldehyde oxidase
(AO3) mRNA, partial cds GI:2792303
Length = 1321
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 250 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMN 381
L L YK GAGE + V S +S+ + F+E N
Sbjct: 942 LALFYKDGAGEPHEYTLSSMWDKVGVSSKFEERVSVVREFNESN 985
>At1g70900.1 68414.m08181 expressed protein
Length = 244
Score = 27.1 bits (57), Expect = 5.2
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 214 KNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFF 393
K +S +GV + LY S SR + K+L DY+ I L++ E NP F
Sbjct: 103 KVYANSLIGVGIASSLYHS-----SRGKFRKYLRWADYTMIATATICLTRALREENPKFL 157
Query: 394 TMANKI 411
A+ +
Sbjct: 158 MAASAL 163
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 335 ASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTF 216
+SL +SP LS+S P P P +S ++P+ +T+
Sbjct: 100 SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSSSSSTY 139
>At4g25180.1 68417.m03625 DNA-directed RNA polymerase III RPC4
family protein contains Pfam profile PF05132: RNA
polymerase III RPC4
Length = 295
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 169 TSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGA 276
T+ + ++E Y+SG P G M ML+YKSGA
Sbjct: 172 TTKRSVRE-YSSGISNPFEGLPEGFMGKMLVYKSGA 206
>At4g00880.1 68417.m00119 auxin-responsive family protein similar to
small auxin up RNA (GI:546362) {Arabidopsis thaliana}
Length = 122
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 312 QKLVDLHTTTFTGA*FVEKH*HHH 241
Q L+D T F G ++ H HHH
Sbjct: 90 QGLIDRENTRFLGTNLLDHHHHHH 113
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 301 DKFLGDVDYSEATNPYISLSKTFSEMNPDFFTMANKIYV 417
D++L Y + T P I KT S P+ N++Y+
Sbjct: 228 DRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYI 266
>At2g26390.1 68415.m03167 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 389
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +1
Query: 154 DAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFL 312
+ + + + K+++ +G NVV SP+ + +L+ L +G+ ++ EI FL
Sbjct: 12 NVVARLAKKVIETDVANGS--NVVFSPMSINVLLSLIAAGSNPVTKEEILSFL 62
>At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 275
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 349 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 188
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
>At2g02960.4 68415.m00247 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 349 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 188
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
>At2g02960.3 68415.m00246 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 349 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 188
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
>At2g02960.2 68415.m00245 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 349 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 188
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
>At2g02960.1 68415.m00244 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 349 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 188
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
>At1g76740.1 68414.m08931 expressed protein weak similarity to
fimbriae-associated protein Fap1 (GI:3929312)
[Streptococcus parasanguinis]; weak similarity to 1MDa_1
protein (GI:24620455) [Caenorhabditis elegans]
Length = 1532
Score = 26.2 bits (55), Expect = 9.0
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 253 MLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY-ISLSKTFSEMNPDFFTMAN 405
+LL SG G E G D EA P I+ K S + PD T+ N
Sbjct: 1383 LLLNSSGGGSNVSGETSILAGTADEDEAAGPIAIAFVKAMS-LTPDELTVKN 1433
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,954,179
Number of Sequences: 28952
Number of extensions: 175815
Number of successful extensions: 442
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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