Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E10
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   0.96 
04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780...    28   5.0  
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...    27   8.8  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 0.96
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 495 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 394
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 0.96
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 363 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 271
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>04_04_0624 +
           26676765-26676879,26676955-26677093,26678012-26678083,
           26678174-26678317,26678402-26678530,26678819-26678938,
           26679015-26679076,26679937-26680170,26680259-26680485,
           26680551-26680683,26680787-26680944,26681139-26681351,
           26681482-26681730
          Length = 664

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 516 RSQEDLENGISGNIGLNVDGNTERLVVES-WLTNLEVVWVTSL 391
           R     EN   GN    VDGN ++   +  WL  LEV+   SL
Sbjct: 256 RPDNQCENSQKGNESSRVDGNQQKSFQQPLWLLILEVITAISL 298


>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 519 LRSQEDLENGISGNIGLNVDGNTERLVVESWLTNLE 412
           ++ +EDL+NGI G++ +  D   +  V+ + + N+E
Sbjct: 327 IQVEEDLKNGIVGSVPIPPDDADKEEVINALVANVE 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,316,267
Number of Sequences: 37544
Number of extensions: 300197
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)