Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E09
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296...    27   6.5  
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269     27   6.5  
03_02_0178 + 6195402-6199158,6199438-6200003                           27   6.5  
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844...    27   6.5  
06_03_1220 - 28505306-28508497                                         27   8.6  
02_02_0726 - 13374061-13374151,13374576-13374787,13374990-133750...    27   8.6  

>06_01_0416 +
           2965761-2965809,2965995-2966172,2966256-2966327,
           2966849-2967137,2967941-2968081,2969011-2969115,
           2969354-2969501,2970023-2970075,2970189-2970266,
           2970361-2970480,2970779-2970943,2971663-2971797,
           2972063-2972182
          Length = 550

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 144 VPWDHVEARARRCSGGVSAGKRHHRCNCYYVSE 46
           VPW   +  ARR + G+   +  HR N Y V +
Sbjct: 186 VPWMREDLFARRDARGIDKVRSSHRVNAYDVED 218


>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
          Length = 309

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 375 HGVIWFTTVEGLREGIIGAYGPSADDL-VTLTSFQE--DAGHFVFG 247
           H  +W   +E + E  +G  G  ADD+   L S  E  D+G+  FG
Sbjct: 142 HAALWVKEIEKMEEARLGGGGGGADDIDRLLDSCSEIFDSGNTDFG 187


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -1

Query: 409  VCLILWHASCGSRRYLVHHS*GVARRYHRG-LWSKCRRSCHPDELPG 272
            VCL   H  CG R  L+      +R Y    L   C    HP E+ G
Sbjct: 1137 VCLHWCHTDCGLRHSLIRKGGSGSRAYSTNELQFHCAACGHPSEMFG 1183


>01_07_0232 +
           42182942-42183490,42183593-42183661,42184320-42184451,
           42184547-42184600,42184714-42184758,42185383-42185522,
           42185777-42185902,42185985-42186002,42186631-42187276,
           42188121-42188843
          Length = 833

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 332 VSSGLMVQVPTILSP*RASRRMPAILSSGVLPL 234
           VSS   + +P + SP +ASRR+ A+  S  LPL
Sbjct: 19  VSSQPPLHLPRLRSPHQASRRLSALPFSRALPL 51


>06_03_1220 - 28505306-28508497
          Length = 1063

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 280 ARQGDKIVGTWTISPDDTFSQPLNCG 357
           +R GD IVG W  SPD      + CG
Sbjct: 43  SRAGDGIVGEWQRSPDCCTWDGVGCG 68


>02_02_0726 -
          13374061-13374151,13374576-13374787,13374990-13375002,
          13375318-13375655
          Length = 217

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 96 VSAGKRHHRCNCYYVSEHHL 37
          +S  K+H +C+ ++VSE H+
Sbjct: 39 ISNAKKHEQCDLFHVSESHI 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,828
Number of Sequences: 37544
Number of extensions: 400063
Number of successful extensions: 1081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)