Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E09
         (505 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens ...    52   1e-06
BC057812-1|AAH57812.1|  159|Homo sapiens transmembrane protein 8...    29   7.0  
AB037748-1|BAA92565.2| 1804|Homo sapiens KIAA1327 protein protein.     29   9.2  

>AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16275 fis, clone NT2RI2027157, moderately
           similar to Mouse SDR2 mRNA. ).
          Length = 626

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPEDKMAGILL 276
           P G    +C  MIP H    Q+VP  + I  +  + + G  I+V +SG        G LL
Sbjct: 24  PNGKVTQSCHGMIPEHGHSPQSVPV-HDIYVSQMTFRPGDQIEVTLSG----HPFKGFLL 78

Query: 277 EARQGDKI----VGTWTISPDDTFSQPLNCGE-PNNAVTHKMHAKELDRQTVSYPWTAPK 441
           EAR  + +    +G++T+  D   SQ L C +   +AV+H+  +K+ +   +   W AP 
Sbjct: 79  EARNAEDLNGPPIGSFTLI-DSEVSQLLTCEDIQGSAVSHRSASKKTE---IKVYWNAPS 134

Query: 442 DLEGDVVFKVT 474
                  F VT
Sbjct: 135 SAPNHTQFLVT 145


>BC057812-1|AAH57812.1|  159|Homo sapiens transmembrane protein 88
           protein.
          Length = 159

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 390 CQRIRQTDCFLPLDSS*GLRRR----RCVQGHPLSRATPSSG 503
           C R+R  DC +P   +   RRR    R ++  P S+A P+SG
Sbjct: 114 CLRLRLADCLVPYSRALYRRRRAPQPRQIRASPGSQAVPTSG 155


>AB037748-1|BAA92565.2| 1804|Homo sapiens KIAA1327 protein protein.
          Length = 1804

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 112 PSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQG 291
           P  C   +   A+D           T +S+   G S DV++SG+ PE ++A      ++ 
Sbjct: 725 PGGCEGPMTSAASDQSDSQLEKVEDTTISTGLVGGSYDVLVSGEVPECEVAHTSPSEKED 784

Query: 292 DKIV 303
           + I+
Sbjct: 785 EDII 788


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,971,127
Number of Sequences: 237096
Number of extensions: 2125461
Number of successful extensions: 5233
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5233
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)