Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E09
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52550.1 68418.m06525 expressed protein                             30   0.77 
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    29   1.3  
At5g10080.1 68418.m01168 aspartyl protease family protein contai...    29   2.4  
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    27   9.5  

>At5g52550.1 68418.m06525 expressed protein
          Length = 360

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -2

Query: 195 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHH 40
           + C D  R          PWD+   +    SGG++    H RC+ Y V +++
Sbjct: 250 EDCDDSYRNTLNQETGFKPWDYT-TKINLFSGGINRFFPHQRCSSYAVHDNN 300


>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 313 SKCRRSCHPDELPGG-CRPFCLRVFC 239
           + C   CH +  PGG CR F  R FC
Sbjct: 48  TNCENVCHNEGFPGGDCRGFRRRCFC 73


>At5g10080.1 68418.m01168 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 103 GAPPSACF-DMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTP 249
           G  PS C  D I    A   +  +P  + T     + GH++   I+GKTP
Sbjct: 447 GWSPSKCQEDKIEPPQASPGSTSSPNPLPTDEQQSRGGHAVSPAIAGKTP 496


>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF01485:IBR domain
          Length = 384

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
 Frame = -1

Query: 406 CLILWHASCGSRRYLVHHS*GVA------RRYHRGLWSKCRRSCHPDELPGGCRPFCLRV 245
           C + WH +   +RY   HS             ++  W +C +  H  EL  G    C+RV
Sbjct: 275 CKVPWHDNLSCKRYKKLHSNRTTNDKQLNELANQESWRQCSKCKHMIELTQG----CVRV 330

Query: 244 FCR 236
            CR
Sbjct: 331 ICR 333


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 302 TILSP*RASRRMPAILSSGVLPL 234
           T+LSP +  RR+P   SS + PL
Sbjct: 34  TVLSPVKGRRRLPTCWSSSLFPL 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,792
Number of Sequences: 28952
Number of extensions: 285226
Number of successful extensions: 697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)