Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E08
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77270.1 68414.m08999 expressed protein 31 0.35
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 28 0.60
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f... 29 2.5
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 29 2.5
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly ... 27 5.7
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit... 27 7.5
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR... 27 7.5
At3g48500.1 68416.m05294 expressed protein 27 7.5
At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1) i... 27 7.5
At3g62880.1 68416.m07064 mitochondrial import inner membrane tra... 27 9.9
At1g15200.1 68414.m01817 protein-protein interaction regulator f... 27 9.9
>At1g77270.1 68414.m08999 expressed protein
Length = 682
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 48 TRYISDRRCANIRRNSAAVVMRVRKKLKTGL-RIRRQDLPQPVPLVLREGQDAQRFENRE 224
TRY+ D + N R + + + R K+LKT + R + + P+V + +D QR +NRE
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKTEIGRADHNSISKTNPVV--KTKDIQR-KNRE 446
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.9 bits (59), Expect(2) = 0.60
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +1
Query: 277 PVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGV 456
PV G DG +C S S + G Q VK+ D+Q +C +++K G
Sbjct: 81 PVTGKDGGDSAEECLSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLK---GHTST 137
Query: 457 TYGNPCLLNCAKQSNPSLSI 516
G + NC + S+S+
Sbjct: 138 ITG--VMYNCKDEHLASVSV 155
Score = 21.4 bits (43), Expect(2) = 0.60
Identities = 6/21 (28%), Positives = 12/21 (57%)
Frame = +1
Query: 232 TCEEADPCVCTFIYAPVCGTD 294
+ + DPCV ++ +P C +
Sbjct: 27 SADSGDPCVLSYTPSPGCAVN 47
>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 144
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 100 PSSCA--CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 240
P+SC C R PVCG D TY C D +++VK+G C+
Sbjct: 68 PASCPVQCFRP-DPVCGEDSVTYWCGC-----ADALCHGVRVVKQGACD 110
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 361 KHRGE-CQEVKVADIQPCICTREIKQVCGSDGVTYGNPC 474
K+RGE C+ + P C R VCG D VTY C
Sbjct: 56 KNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTYWCGC 93
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 133 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 240
PVCG+DG TY C D ++VK+G C+
Sbjct: 53 PVCGTDGVTYWCGC-----PDAACHGARVVKKGACD 83
>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 472
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 271 YAPVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVAD 399
YA G G +PN+C L+ L PS +K E ++V D
Sbjct: 21 YAAQQGQQGQQFPNECQLDQLNALEPSHVLK--SEAGRIEVWD 61
>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and
PF03931:Skp1 family, tetramerisation domain; identical
to cDNA UFO binding protein UIP2 mRNA, partial cds
GI:3719210
Length = 171
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 98 CRRHARAQET*DRSADQTARLTTTSAS 178
C+RH A E + +AD A TTT+ +
Sbjct: 60 CKRHVEAAEKSETTADAAAATTTTTVA 86
>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1253
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 452 PSLPQTCLISRVQIHGCISATLTSW 378
P+LPQ+ + + +HGC+S SW
Sbjct: 983 PALPQS--LKLLNVHGCVSLESVSW 1005
>At3g48500.1 68416.m05294 expressed protein
Length = 668
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 265 FIYAPVCGTDGNTYPNKCSLECSRPLAP 348
F + P+ DG+T P++ +C RP P
Sbjct: 354 FDFPPIFHRDGDTNPDEIRRDCGRPPEP 381
>At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1)
identical to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958]; updated per Conklin
PL et al, PNAS 1999, 96(7):4198-203
Length = 361
Score = 27.1 bits (57), Expect = 7.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 422 RVQIHGCISATLTSWHS 372
R++ H CIS+++ WHS
Sbjct: 297 RIKKHACISSSIIGWHS 313
>At3g62880.1 68416.m07064 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains PFam PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 136
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 391 VADIQPCICTREIKQVCGSDGVTYGNPCLLNCAKQSNPS 507
VA I TR QV G G+ L NC + NP+
Sbjct: 95 VAGAAVAISTRNWTQVVGMAGLVSAFSVLANCTRTENPN 133
>At1g15200.1 68414.m01817 protein-protein interaction regulator
family protein contains Pfam PF04696: pinin/SDK/memA/
protein conserved region
Length = 423
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 60 SDRRCANIRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRFENRER 227
SD++ + + R S + R ++ +T R LP+P P VL + +D + NR R
Sbjct: 112 SDKKQSGLHRGSWS--QRDAEQRRTNKRYEAFALPEPAPRVLPKNED-PKLVNRNR 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,275,579
Number of Sequences: 28952
Number of extensions: 236595
Number of successful extensions: 703
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -