Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E07
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0239 + 21637451-21638098,21638172-21638714                       29   2.7  
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031...    28   4.8  

>11_06_0239 + 21637451-21638098,21638172-21638714
          Length = 396

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 162 SCHISLLLKLVPTIKSLHCTTHIKDRRTTNKTGATFI 52
           +CH  LLL     ++ + CT     RR     G T++
Sbjct: 129 TCHSQLLLAAAGAMRGVRCTAFFSMRRVVELAGGTWV 165


>04_04_0423 -
           25102305-25102489,25102571-25102717,25103079-25103150,
           25103305-25103327,25103792-25103863,25104064-25104112,
           25104344-25104415,25104880-25104951,25105281-25105352,
           25106569-25106640,25106810-25106881,25106974-25107048,
           25107324-25107470,25107598-25107805,25108361-25108489,
           25108563-25108769
          Length = 557

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 277 VCVVQIT---GNYTLYNLLPRIRKENFFNSFLQWD 182
           +CV ++    G Y+ ++LLPR   +  FN  ++W+
Sbjct: 62  LCVAKVREDIGKYSDFSLLPRDLSQQVFNELVEWN 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,225,747
Number of Sequences: 37544
Number of extensions: 239250
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)