Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E07
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81070-1|CAB02997.1|  137|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z81070-1|CAB02997.1|  137|Caenorhabditis elegans Hypothetical
           protein F26E4.2 protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 158 QEKADYNAIPLKKRVKEVFFSDPGQQIIKGVIAR 259
           QE  D     +KKR  +V +S  G++++ GV+ +
Sbjct: 23  QEDGDEQIFDVKKRKPQVTYSGDGRRMLDGVVEK 56


>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 134 SFNNRLIWQEKADYNAIPLKKRVKEVFFSDPGQQIIKGVIARDLDHTDAIAS 289
           S++N  +WQ K+D N   +  +VKE    +   Q+I+  ++  L  T A  S
Sbjct: 644 SYSNAHMWQHKSDINVASVHVQVKE----EANAQMIRHRVSNILKSTGATHS 691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,163,537
Number of Sequences: 27780
Number of extensions: 231734
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)