Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E06
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    26   3.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   4.2  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.2  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   5.6  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   5.6  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   7.3  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    24   9.7  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    24   9.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   9.7  

>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 216 SKLASEYPNVEVANPYLNSGGFIGYLPEVAEILNNKPIKDEDDD 347
           S+LA++  NV      L+S G I  +PE A ++  KP KDE  D
Sbjct: 8   SRLAAKIANV------LDSKGTI--IPEAAPVMLKKPAKDESVD 43


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 281  KTTRIQIRISDFNIRIFRCQFAVWPTKLLSR 189
            KT + QIR S+FN+ +   ++ +    LLSR
Sbjct: 957  KTLQSQIRSSNFNVLLTTFEYIIKDRPLLSR 987


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 279 FIGYLPEVAEILNNKPIKDEDDD 347
           +I YL  V+ ++  KP+  +DDD
Sbjct: 338 YIYYLDRVSSMMTGKPVAFQDDD 360


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +3

Query: 291 LPEVAEILN---NKPIKDEDDDQLYYTK 365
           +P + +ILN   +KP+   DD +LY+T+
Sbjct: 582 IPRLDDILNKIADKPLYSPDDWELYFTR 609


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   MNHPGGGQKVNLLKNKLKEIVKSGDKNKIILFTD 107
           +NHP     + LLK   K+  +     ++++FT+
Sbjct: 446 LNHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTE 479


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 132 TIKEILEKFKSFPDTRVLFSAEQFCWP--DSKLASEYPNVEVANPYLNSGGFIGYLPEVA 305
           ++ E++ K  S P T ++   ++  +P  +S+LA    N  V +P +   G    L    
Sbjct: 159 SMPEVVNKISS-PTTPIVGMGQRGSYPLPNSQLAGRLSNSPVKSPNMPESGLAKSLAAAR 217

Query: 306 EILNNKP 326
             L N+P
Sbjct: 218 NPLLNRP 224


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 219 KLASEYPNVEVANPYLNSGGFIGYLPEVAEILNNK--PIKDEDDDQLY 356
           K+    PNVE+     +    IG L EVA     K  P  D+D  +LY
Sbjct: 185 KVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELY 232


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 261 YLNSGGFIGYLPE-VAEILNNKPIKD 335
           +L +G F+GY P  V++I  N  +KD
Sbjct: 147 FLETGPFVGYYPSVVSKIRANIKLKD 172


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 253 ATSTLGYSDASLLSGQQNCSAENSTRVSGN 164
           +TS+ G S + LLS   +C+   S   +GN
Sbjct: 375 STSSTGTSSSPLLSTSTSCTTSTSIPPTGN 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,366
Number of Sequences: 5004
Number of extensions: 35868
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)