Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E06
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0154 + 14494319-14495857 34 0.063
01_06_0369 - 28794283-28794427,28794865-28795874 29 2.4
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157 28 3.1
01_05_0758 + 24954701-24954793,24954907-24955086,24955676-249558... 28 3.1
04_01_0347 - 4546566-4546604,4546710-4546748,4546834-4547059,454... 27 5.5
03_02_0403 + 8160664-8163690 27 7.3
09_03_0169 - 13010909-13012033 27 9.6
07_01_1200 - 11413145-11413780,11415357-11415947 27 9.6
02_05_1146 - 34440647-34441674,34442138-34443896 27 9.6
01_01_0363 + 2850954-2853675,2853819-2854225 27 9.6
>12_02_0154 + 14494319-14495857
Length = 512
Score = 33.9 bits (74), Expect = 0.063
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 30 KVNLLKNKLKEIVKSGDKNKIILFTDSYDIMYLGTIKEILEKFKSFPDTRVLFSAEQFCW 209
K N+L+ LK + +KII+ T + + +GT++ I KF P+ F A F
Sbjct: 293 KKNMLEELLKSLSCGKQGSKIIVTTSNKHVTTIGTVQPIKLKFLPCPEYWFFFKAHAFAG 352
Query: 210 PD 215
D
Sbjct: 353 TD 354
>01_06_0369 - 28794283-28794427,28794865-28795874
Length = 384
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 3 DMNHPGGGQKVNLLKNKLKEIVKSGDKNKIILFTDSYDIMYLGTIKEI 146
D++H K + L KLKEI K DK+ I + +D +D + L +I
Sbjct: 329 DLDHDASVSKSDFLIYKLKEIGKIDDKD-IAMISDQFDQLGLAKCGKI 375
>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
Length = 591
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 210 PDSKLASEYPNVEVANPYLNSGGFIGYLPEVAEILNNKPIKDEDDDQLYYTK---IYLDK 380
P + SE VA+P L + + E +E + + + D+DD+ ++ + ++D+
Sbjct: 349 PAEQTRSEVSESPVASPALETTSYASAWDERSEAVMDADVDDDDDELVHNVRTVDTFVDE 408
Query: 381 DLRESL 398
LR+ +
Sbjct: 409 QLRQDI 414
>01_05_0758 +
24954701-24954793,24954907-24955086,24955676-24955870,
24955982-24956089,24956211-24956288,24956383-24956464,
24956624-24956783,24956877-24957179,24957295-24957513,
24957598-24958057,24958175-24958240,24958332-24958511
Length = 707
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 21 GGQKVNLLKNKLKEIVKSGDKNKI-ILFTDSYDIMYLGTIKEILEK 155
GG+ +LL + K ++ K K+ I+ Y + + TIKE++EK
Sbjct: 288 GGKLFDLLNERSKLCMREDGKQKVCIVGLQEYRVSDVETIKELIEK 333
>04_01_0347 -
4546566-4546604,4546710-4546748,4546834-4547059,
4547222-4547374,4547453-4547706,4547734-4548366,
4548453-4548899,4548978-4549277,4549386-4549697,
4550190-4550243
Length = 818
Score = 27.5 bits (58), Expect = 5.5
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Frame = +3
Query: 21 GGQKVNLLKNKLKEIVKSGDKNKIILFTDSYDIMYLGTIKEILEK--FKSFPDTRVLFSA 194
G QK N+L++ +K + + + F +S+D Y ++ L + FK + + F A
Sbjct: 76 GRQKFNILQDDIKHVPAAEKDIAWLTFKESFD--YPAEHEDRLRRAAFKVWEE----FHA 129
Query: 195 EQFCWPDSKLASE-YPNVEVANPYLNSGGFIGYLPEVAEILNNKPIKDEDDDQLYYTKI 368
++ P+S+ +SE Y ++ N +L+ G GY + E + +E + L + I
Sbjct: 130 KK-STPESRASSEAYRLLQTKNQHLHRLGTAGYAGKEEEWQHEDEEAEESNTPLVFGDI 187
>03_02_0403 + 8160664-8163690
Length = 1008
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 297 EVAEILNNKPIKDEDDDQ 350
EVA+ LN +P ++EDDD+
Sbjct: 48 EVADDLNGEPAEEEDDDE 65
>09_03_0169 - 13010909-13012033
Length = 374
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 264 LNSGGFIGYLPEVAEILNNKPIKDEDDDQLYYTKIYLDKDLRESLKISLD 413
L +G + LP+ +L N + D DD++L+ K + + S++ + D
Sbjct: 115 LVTGALVEVLPQEPYMLFNFVVSDRDDERLFGVKATITIKVASSIRHTSD 164
>07_01_1200 - 11413145-11413780,11415357-11415947
Length = 408
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 297 EVAEILNNKPIKDEDDDQ-LYYTKIYLDKDLR 389
EV + NKP+ DE+D Q L Y ++ + ++ R
Sbjct: 231 EVRNTVKNKPLVDEEDSQNLKYLEMIIKENFR 262
>02_05_1146 - 34440647-34441674,34442138-34443896
Length = 928
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 157 LNHFLIRVCCSRLSSFVGQTANWHR 231
LNHF R C++L + QT +HR
Sbjct: 176 LNHFKRRTLCAQLDTLRRQTVPFHR 200
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -3
Query: 274 PEFKYGLATSTLGY--SDASLLSGQQ-NCSAENSTRVSGNDLNFSNISFIVP 128
P FK GL++ TL S S + + CS TRV G L SN++ +P
Sbjct: 26 PAFKAGLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPSSNLAGTLP 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,252
Number of Sequences: 37544
Number of extensions: 199252
Number of successful extensions: 579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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