Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E06
(459 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 3e-19
SB_23514| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_50770| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_34040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9) 28 3.2
SB_53314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_24983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_19990| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 91.5 bits (217), Expect = 3e-19
Identities = 59/145 (40%), Positives = 78/145 (53%)
Frame = +3
Query: 15 PGGGQKVNLLKNKLKEIVKSGDKNKIILFTDSYDIMYLGTIKEILEKFKSFPDTRVLFSA 194
PGG K+NLLK+ + E KN +++F+D + L K DT SA
Sbjct: 81 PGGAHKINLLKDAVAEY--KDKKNLVLMFSDRISTLRLAMAK----------DT----SA 124
Query: 195 EQFCWPDSKLASEYPNVEVANPYLNSGGFIGYLPEVAEILNNKPIKDEDDDQLYYTKIYL 374
++F + N Y S GFIGY P +I+N KP+KDEDDDQL+YT IYL
Sbjct: 125 QEF---------------IKNLY--SSGFIGYAPVFHQIINEKPVKDEDDDQLFYTNIYL 167
Query: 375 DKDLRESLKISLDHNSVIFENLNGA 449
DK+ R+ + LDH + IF NLNGA
Sbjct: 168 DKEKRDKFNMKLDHKAEIFMNLNGA 192
>SB_23514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 39 LLKNKLKEIVKSGDKNKIILFTDSYDIMYLGTIKEILEK 155
LLK +IV GD I+L DS DI+ G + +IL K
Sbjct: 64 LLKGDSVDIVVEGDSVDILLKGDSVDIVVEGDLVDILLK 102
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 18 GGGQKVN-LLKNKLKEIVKSGDKNKIILFTDSYDIMYLGTIKEILEK 155
G G V+ LLK +I+ GD I+L DS DI+ G +IL K
Sbjct: 38 GVGDSVDILLKGDSVDILLKGDSVDILLKGDSVDIVVEGDSVDILLK 84
>SB_50770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 28.3 bits (60), Expect = 3.2
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 280 KPPEFKYGLATSTLGYSDASLLSGQQNCSAENST-RVSGNDLN 155
KPP F+ G T TL S S SG +N S+ NS R+S N L+
Sbjct: 100 KPP-FESGTFTCTLRMSPVS-FSGVRNWSSSNSACRISHNSLS 140
>SB_34040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 163 HFLIRVCCSRLSSFVGQTANWHRNILML 246
HF++R CC+R + + A+ HR +L++
Sbjct: 132 HFIVRPCCARSTCGLHCAADIHRPVLII 159
>SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)
Length = 389
Score = 28.3 bits (60), Expect = 3.2
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 280 KPPEFKYGLATSTLGYSDASLLSGQQNCSAENST-RVSGNDLN 155
KPP F+ G T TL S S SG +N S+ NS R+S N L+
Sbjct: 325 KPP-FESGTFTCTLRMSPVS-FSGVRNWSSSNSACRISHNSLS 365
>SB_53314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 274 PEFKYGLATSTLGYSDASLLSGQQNCSAENST-RVSGNDLN 155
P F+ G T TL S S SG +N S+ NS R+S N L+
Sbjct: 169 PSFERGTFTCTLRMSPVS-FSGVRNWSSSNSACRISHNSLS 208
>SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 315 NNKPIKDEDDDQLYY 359
NNK IKD+DDD++ Y
Sbjct: 39 NNKRIKDDDDDEVLY 53
>SB_24983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 286 PIKPPEFKYGLATSTLGYSDASLLSGQQNCSAENSTRVSGNDLNFSNI 143
P+ P+ G+ T ++ A +GQ NC++ S R G L F +
Sbjct: 242 PVDKPQIPPGVQTLSIEQQQACK-NGQLNCTSRGSFRFVGAGLRFDRL 288
>SB_19990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -3
Query: 238 GYSDASLLSGQQNCSAENSTRVSGND---LNFSN 146
GYS S+L G Q +N R GN+ LNF N
Sbjct: 73 GYSQNSMLGGPQENFQQNYKRTPGNNKRGLNFQN 106
>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 24 GQKVNLLKNKLKEIVKSGDKNKIILFTD 107
G +++K+ ++VKSG I+LFTD
Sbjct: 294 GSDRQAIQDKMLQLVKSGKLGDILLFTD 321
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,768,335
Number of Sequences: 59808
Number of extensions: 260049
Number of successful extensions: 690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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