Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E06
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote...    29   1.5  
At4g09290.1 68417.m01537 hypothetical protein                          28   2.6  
At4g15240.1 68417.m02336 fringe-related protein + weak similarit...    28   3.5  
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    27   6.1  
At3g48240.1 68416.m05264 octicosapeptide/Phox/Bem1p (PB1) domain...    27   8.1  

>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
           kinase, putative contains protein kinase domains
          Length = 890

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 223 SLLSGQQNCSAENSTRVSGNDLNFSNISFIVPKYMIS 113
           +LLSG    S EN  R++  +++++N+S I+PK   S
Sbjct: 443 NLLSGPIPSSLENLKRLTHFNVSYNNLSGIIPKIQAS 479


>At4g09290.1 68417.m01537 hypothetical protein
          Length = 376

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 12  HPGGGQKVNLLKNKLKEIVKSGDKNK 89
           H GGG      KNK KE+V   D++K
Sbjct: 77  HSGGGDAQKKKKNKKKEVVVESDEDK 102


>At4g15240.1 68417.m02336 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 488

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 9   NHPGGGQKVNLLKNKLKEIVKSGDKN-KIILFTDSYDIMYLGTIKEILEKF 158
           N PGG +    +   +KE V  GDK+ +  +F D   + ++  +  +L K+
Sbjct: 142 NFPGGLRSAIRVARVVKETVDRGDKDVRWFVFGDDDTVFFVDNLVTVLSKY 192


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 30  KVNLLKNKLKEIVKSGDKNKIILFTDSYDIMYLGTIKEILEKFK 161
           +V LL    +  VK+G+  +IIL  ++ D MY    +E ++KF+
Sbjct: 25  QVKLLHVWRQYSVKAGESIEIILVDEAGDKMYASVRREQIKKFE 68


>At3g48240.1 68416.m05264 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein contains Pfam profile PF00564:
           PB1 domain
          Length = 180

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 45  KNKLKEIVKSGDKNKIILFTDSYDIMYLGTIKEILEKFKSFPDTRVLFSAEQFCWPDSKL 224
           KN LK +   G   +I+  +    + Y+G    +L    S   T +    E+FC    +L
Sbjct: 11  KNSLKFLCSYG--GRILPRSIDGKLRYVGGFTRVLSVHHSISFTELTMKLEEFCGYSVEL 68

Query: 225 ASEYPN 242
             + PN
Sbjct: 69  KCQLPN 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,018,297
Number of Sequences: 28952
Number of extensions: 176279
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)