Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E05
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507...    29   2.2  
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    28   5.1  
11_04_0234 + 15187065-15188241,15188316-15188494                       27   6.8  
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    27   8.9  
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924...    27   8.9  
01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436           27   8.9  

>03_05_1021 -
           29750155-29750220,29750342-29750428,29750614-29750799,
           29750965-29751059,29751179-29751284,29751378-29751452,
           29751548-29751679,29751782-29751961,29752371-29752567,
           29752651-29752906
          Length = 459

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 7   LVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAK 162
           LV+G   +  T  L    E+SG+P    D     GP  K+   L++ E+  K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 359 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPXSSGRRKA 240
           M T P       +A   A  GS  +T  PPSP   GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 1/127 (0%)
 Frame = +1

Query: 4   KLVLGISTTGRTWKL-DSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLINPNQ 180
           KLV+GI   GR+W L + D    G P   A   G     +   G+++Y EI   L     
Sbjct: 276 KLVMGIPLFGRSWFLRNKDKNGLGAPTAAA---GTKQRKSNQIGVIAYAEIEEYL----- 327

Query: 181 NGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNLGGVSI 360
             K   +   +D ++    Y +        G  WVS++       K  +V    L G  +
Sbjct: 328 --KSQSVFVTHD-NQSVADYFY-------SGDLWVSFDSAVVVQEKVEFVAKSQLLGYFL 377

Query: 361 MDLSMDD 381
             +S DD
Sbjct: 378 STISFDD 384


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 289 KKPRSHLHHXHQEGGRHR 236
           ++P+SH HH H  G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181


>01_02_0015 +
           10191793-10191957,10192085-10192229,10192331-10192419,
           10193009-10193063,10193607-10193692,10194006-10194065
          Length = 199

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 295 DPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDK 408
           D +  G  A  +     G   ++  ++D+FR LCTGDK
Sbjct: 71  DVEVGGEPAGRIVIGLFG--EVVPKTVDNFRALCTGDK 106


>01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436
          Length = 86

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 160 KLINPNQNGKRPHLRK 207
           K I PN++GK PH+RK
Sbjct: 15  KTIPPNRHGKAPHVRK 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,340
Number of Sequences: 37544
Number of extensions: 335696
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)