Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E01
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    29   0.56 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    28   0.97 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    28   0.97 
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   5.2  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   6.9  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   9.1  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   9.1  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   9.1  

>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = +1

Query: 97  VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDXYTNKKAVEEFL 243
           VER+K++ +L Q  D + ++DE YY +  D Y+   EA    +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 428 ILQLSSAMILMDSFYQLLMKFIHNSSXIWTLYLRFI 535
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 112 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVE 234
           K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 514 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 633
           D  + I R K   G + HD   +NY ++   E++ +  N S
Sbjct: 83  DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 97  VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 246
           + R+KK+L+L +  D + V+DE Y   +  D   +++    K     FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 493 PQFFVXMDTLLKIYRTKMQDGILHDAKAINYGIVKEEE 606
           P  F  +D L  +YR+K +D   HD K+    ++ EE+
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED 152


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +1

Query: 1   VLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDEYY 168
           ++  A +I   +++  +   +H   +D   V  + QK+      S   D D+  V DE+ 
Sbjct: 30  IMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDEFM 89

Query: 169 KIGKDYDVEA 198
           +I +++ ++A
Sbjct: 90  QIKEEFPMKA 99


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 609 LLFLFYNSIINSLCIVKN 556
           ++FLF N +++ +C VKN
Sbjct: 38  IIFLFLNYVVDIVCYVKN 55


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 400 NEGQFL-YAYYIAVIQRNDTHG 462
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,840
Number of Sequences: 5004
Number of extensions: 50589
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)