Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E01
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 29 3.4
At5g27230.1 68418.m03248 expressed protein ; expression support... 28 5.9
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ... 28 5.9
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to... 28 5.9
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa... 28 5.9
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH... 27 7.8
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH... 27 7.8
At5g34900.1 68418.m04114 Ulp1 protease family protein contains P... 27 7.8
At4g22320.1 68417.m03227 expressed protein 27 7.8
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 148 NVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLKLYRI 258
N +DEY K DYD +D T K+A + L + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 82 VDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 246
V A+ +E+++K L L + + E+ K KD+D+E + K+ VE+ K
Sbjct: 69 VKALELEKKEKELCLIDESMKAK-QSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122
>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
Zea mays
Length = 472
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 481 YEVYPQFFVXMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANY 630
Y++ +F V + YR K+ + ++ N +VK E+ VY ANY
Sbjct: 188 YKMAEEFLVTSHGNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANY 237
>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 25 ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 177
++V S VV Y F V + E +KK+ F + DQ DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356
>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1228
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 387 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 241
S SG ++E +KV +++E K + + E+G++++L K DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644
>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 742
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 282 LIVLGKITDSVQFQEFFNSFLIGVVI 205
++V G ITD++ F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229
>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 810
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 282 LIVLGKITDSVQFQEFFNSFLIGVVI 205
++V G ITD++ F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297
>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At4g04010,
At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
Length = 767
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 112 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANI-DXYTNKKAVEEFLKLYRIGYLPKYYEFS 288
K+++L DV ++ V+ IG D ++ + D +TN ++ L+L ++GY K E++
Sbjct: 287 KIVNLVNDVYEIEVNTI---IGNPEDFKSLVPDFHTNDTEFQQVLELVKMGYRLKKTEWN 343
>At4g22320.1 68417.m03227 expressed protein
Length = 238
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 76 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEE 237
K V +E QKK ++ ++ D++ DD KI +D VE D K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,248,965
Number of Sequences: 28952
Number of extensions: 257988
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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