Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D24
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...    93   9e-21
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   1.5  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   1.5  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   2.6  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    25   2.6  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    25   3.4  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    24   5.9  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    23   7.9  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    23   7.9  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           23   7.9  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score = 93.1 bits (221), Expect = 9e-21
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +2

Query: 128 GNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSDANKAKGIT 301
           G+ + G  +F  RCAQCHTVE GG +KVGPNLHG +GRKTGQA GFSY++AN+ KGIT
Sbjct: 6   GDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGIT 63


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 6   IVSCVRVHGCLRITITKIPVARNFIAVLFFTLN 104
           + S   V GC R+ I K  +A  F   L FTLN
Sbjct: 337 LYSIEMVGGCTRVPIVKEVIANYFGKGLSFTLN 369


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 218 LALPCVYHLPP 186
           L +PC YHLPP
Sbjct: 50  LKIPCTYHLPP 60


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 251 VQSCDHRIHVDLALPCVYHLPPQCGIVHIFAR 156
           V++ DH ++VD   P V+ +    G++++  R
Sbjct: 502 VENLDHTVYVDSITPPVFVIDHSKGVIYVSDR 533


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 244 DWTGPWIFLLGC 279
           DW G W+ +LGC
Sbjct: 264 DWKGKWLEILGC 275


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 307 PHGNTFSFVGIRVRKSR-GLSSLATIESM*IW 215
           P G T+ FVG R+  SR   S +A+   + +W
Sbjct: 124 PRGLTYDFVGQRLLTSRASFSQVASFMGVCVW 155


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 278 HPSKKIQGPVQSCDHRIHVDLALPCVYHLP 189
           H +KK+   + +  HR+ V  A+  +Y+ P
Sbjct: 153 HYNKKLYNMIHAHHHRLQVPYAMGALYNHP 182


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 230 FYGRKTGQAPGFSYSDANKAK 292
           F+G +TG A  F+Y  + +AK
Sbjct: 56  FFGSQTGTAEDFAYRFSTEAK 76


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 25  FTAVSESRSLKFLW 66
           FT++ ES SLKF W
Sbjct: 244 FTSIEESLSLKFGW 257


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 193 CLHSVALCTSLHENFLSIFSVSCRHT 116
           C     L   + ++F   F  SCRHT
Sbjct: 402 CNTGFNLLGKMKQSFFEYFQASCRHT 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,786
Number of Sequences: 5004
Number of extensions: 28105
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)