Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D24
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760 82 1e-16
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386... 72 8e-14
05_02_0041 - 5914708-5914785,5915517-5915600,5915829-5915930,591... 33 0.035
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385 29 0.98
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 28 1.3
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 28 1.3
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029... 27 2.3
01_06_0886 + 32725504-32725824,32725905-32726658,32727911-327280... 27 2.3
04_03_0200 - 12570414-12570712,12572704-12573007 27 4.0
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746... 26 5.2
02_05_1198 + 34918953-34919026,34919151-34919370,34919462-34919587 26 6.9
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 26 6.9
12_02_0990 + 25073910-25074734 25 9.2
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 25 9.2
05_04_0383 - 20801036-20801309,20801413-20801538,20801706-208017... 25 9.2
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 25 9.2
>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
Length = 112
Score = 81.8 bits (193), Expect = 1e-16
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +2
Query: 122 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSDANK 286
P GN + G+KIF +CAQCHTV+ G HK GPNL+G +GR++G PG+SYS ANK
Sbjct: 8 PPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANK 62
>01_06_1583 +
38436958-38437069,38438167-38438300,38438542-38438608,
38438900-38438937,38439302-38439391
Length = 146
Score = 72.1 bits (169), Expect = 8e-14
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 107 TIMGVPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSDANK 286
T P G+A G+KIF +CA CH V+ HK GPNL+G +GR++G APGFSY +K
Sbjct: 3 TFSDAPPGDAAAGEKIFRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSGDK 62
>05_02_0041 -
5914708-5914785,5915517-5915600,5915829-5915930,
5916025-5916117,5916259-5916396,5916495-5916582,
5916693-5916781,5916882-5916947,5917069-5917183,
5917290-5917621
Length = 394
Score = 33.5 bits (73), Expect = 0.035
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +2
Query: 119 VPAGNAENGKKIFVQRCAQCHTVEA-GGKHKVGPNLHGFYG---RKTGQAPGFSYSDANK 286
V G ++NGK Q+ A H +EA +H+ G NLH +YG R P F + D +
Sbjct: 150 VGKGLSKNGK---AQKLALQHWLEAIDPRHRYGHNLHIYYGVWSRSESTEPFFYWLDIGE 206
Query: 287 AKGITMGR 310
K + + R
Sbjct: 207 GKEVNLDR 214
>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
Length = 157
Score = 28.7 bits (61), Expect = 0.98
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 219 FG-PTLCLPPASTVWHCAHLCTKI 151
FG PTLCLPP +T W A T +
Sbjct: 21 FGMPTLCLPPIATYWSHASFKTDL 44
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 86 NCNKIPGHRNFSDRDSETAVN 24
+C+ IPGHR+ D+ + T VN
Sbjct: 626 SCSSIPGHRDLFDKATYTTVN 646
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Frame = +2
Query: 137 ENGKKIFVQRCAQCHTVEAGGKHKVGPNLH-----GFYGRK---TGQAPGFSYSDANKAK 292
ENGK + RC CHTV G K LH G +K T Q P S S A+ A
Sbjct: 150 ENGKPVKA-RCIHCHTVVKCGSEKGTSVLHNHLKSGSCNKKREATDQQPNPSSSTADTAA 208
Query: 293 GITM 304
T+
Sbjct: 209 NSTL 212
>11_05_0033 +
18500092-18501372,18502419-18502826,18502948-18502990,
18503236-18503282,18504582-18505901
Length = 1032
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 281 WHPSKKIQGPVQSCDHRIHVDLALPCVYH 195
W + I GP++SC H +++ L +P ++H
Sbjct: 261 WQDTDGILGPLESCVHALYL-LFVPVLFH 288
>01_06_0886 +
32725504-32725824,32725905-32726658,32727911-32728033,
32729477-32729535,32731427-32731732,32732006-32732236,
32732332-32732484,32732567-32732836
Length = 738
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/19 (52%), Positives = 16/19 (84%), Gaps = 2/19 (10%)
Frame = +3
Query: 12 SCVRVHGCLRITI--TKIP 62
SC+RVHGC+R+ + +K+P
Sbjct: 524 SCLRVHGCVRLKLIESKVP 542
>04_03_0200 - 12570414-12570712,12572704-12573007
Length = 200
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 137 ENGKKIFVQRCAQCHTVEAGGKHKVGPNLH 226
ENGK + RC CHTV G K LH
Sbjct: 144 ENGKAVKA-RCIHCHTVVKCGSDKGTSVLH 172
>05_05_0219 +
23371561-23371680,23371799-23372207,23374520-23374635,
23375385-23375855
Length = 371
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 125 AGNAENGKKIFVQRCAQCHTVEAGGKHK 208
AG A G+K A TV AGG HK
Sbjct: 27 AGRALQGEKARPSEAAPAPTVAAGGSHK 54
>02_05_1198 + 34918953-34919026,34919151-34919370,34919462-34919587
Length = 139
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 122 PAGNAENGKKIFVQR-CAQCH 181
P+ A+ G+K+F+Q C CH
Sbjct: 22 PSDGAQRGRKVFMQSDCTACH 42
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 213 PTLCLPPASTVWHCAHLCTKIFFPFSA 133
PT+ P + V+ C LC +IF+ ++
Sbjct: 211 PTVTPPESRPVFECLRLCCEIFYSLNS 237
>12_02_0990 + 25073910-25074734
Length = 274
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 254 PVQSCDHRIHVDLALPCVYHLPPQCGIVHIFARKFSFHF 138
P CDH +H ALP PP + H F + +F F
Sbjct: 42 PFAGCDHDLHRQCALPL---SPPPPPLRHPFYPRCAFVF 77
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 231 SMVARLDRPLDFLTRMPTKLKVLPWG 308
S +LDR F+ MP K ++ WG
Sbjct: 702 SRAGQLDRAYQFILNMPIKPEMTVWG 727
>05_04_0383 -
20801036-20801309,20801413-20801538,20801706-20801730,
20801808-20802259,20802330-20802394,20802487-20802711,
20804750-20804878,20805095-20805306,20806861-20806894
Length = 513
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 184 SVALCTSLHENFLSIFSVSCRHTH 113
SV +S H + LS+FS C H H
Sbjct: 177 SVGAASSGHGSRLSLFSDDCEHRH 200
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 152 IFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSDANKAKGI 298
+FV CA C+ V+ GG+ + G G+ G G+A G + A G+
Sbjct: 131 LFVISCAGCNRVDGGGE-RAGAGGVGWNG---GEAVGAVTAQQEAAPGV 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,787,939
Number of Sequences: 37544
Number of extensions: 206902
Number of successful extensions: 517
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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