Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D24
(310 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31183| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 6e-13
SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96) 31 0.14
SB_54615| Best HMM Match : rve (HMM E-Value=4.4e-25) 28 1.3
SB_36032| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=1.9) 28 1.3
SB_31807| Best HMM Match : rve (HMM E-Value=4.4e-25) 28 1.3
SB_49127| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_26932| Best HMM Match : rve (HMM E-Value=3.2) 27 3.1
SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_17464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 26 5.4
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_43666| Best HMM Match : SAP (HMM E-Value=1.2e-08) 26 7.2
SB_27444| Best HMM Match : Phage_integrase (HMM E-Value=0.0013) 26 7.2
SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08) 26 7.2
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 25 9.5
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 25 9.5
SB_51958| Best HMM Match : TBC (HMM E-Value=0.00039) 25 9.5
SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_31183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 69.3 bits (162), Expect = 6e-13
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = +2
Query: 194 GGKHKVGPNLHGFYGRKTGQAPGFSYSDANKAKGITMG 307
GGKHK GPNLHG +GRKTGQA GFSY+ AN+ KGIT G
Sbjct: 49 GGKHKTGPNLHGLFGRKTGQAEGFSYTTANQNKGITWG 86
>SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)
Length = 570
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 266 KIQGPVQSCDHRIHVDLALPCVYHL 192
KI Q+C H I + ALPCV HL
Sbjct: 106 KIHSVAQACSHAILPEYALPCVIHL 130
>SB_54615| Best HMM Match : rve (HMM E-Value=4.4e-25)
Length = 460
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -3
Query: 269 KKIQGPVQSCDHRIHVDLALPCVYHLPPQCGIVHIFARKFSFHFQRF 129
K + P+Q+ H+++ L +P CG H+ A HF ++
Sbjct: 151 KPVTKPIQADGSLCHLEMDLIVFRKIPCNCGRRHLLALHVEDHFSKY 197
>SB_36032| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=1.9)
Length = 108
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 152 IFVQRCAQCHTVEAGGKHKVG-PNLHGFYGRKTGQAPGFSYSDANKAKGITMGR 310
+ V RC++CH V H V HG + + G + ++ G+T+ R
Sbjct: 48 VTVSRCSRCHGVTVSRCHGVTVSRCHGVTVSRCSRCHGVTVFTVSRCHGVTVSR 101
>SB_31807| Best HMM Match : rve (HMM E-Value=4.4e-25)
Length = 460
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -3
Query: 269 KKIQGPVQSCDHRIHVDLALPCVYHLPPQCGIVHIFARKFSFHFQRF 129
K + P+Q+ H+++ L +P CG H+ A HF ++
Sbjct: 151 KPVTKPIQADGSLCHLEMDLIVFRKIPCNCGRRHLLALHVEDHFSKY 197
>SB_49127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 269 KKIQGPVQSCDHRIHVDLALPCVYHLPPQCGIVHIFARKFSFHFQRF 129
K + P+Q+ H+++ L +P CG H++A HF ++
Sbjct: 151 KPVTKPIQADGFLSHLEMDLIDFRKIPCNCGRRHLWALHVEDHFSKY 197
>SB_26932| Best HMM Match : rve (HMM E-Value=3.2)
Length = 241
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 269 KKIQGPVQSCDHRIHVDLALPCVYHLPPQCGIVHIFARKFSFHFQRF 129
K + P+Q+ H+++ L +P CG H++A HF ++
Sbjct: 122 KPVTKPIQADRFLSHLEMDLIDFRKIPCNCGRRHLWALHVEDHFSKY 168
>SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +2
Query: 77 YCSSIFYAKLTIMGVPAGNAENGKKIFVQRCAQCHTVEAGGKHKVG 214
+ S+ + +G P G+ G FV RC + GG + G
Sbjct: 113 HVDSVMFCLSKGLGAPVGSVVVGTTEFVSRCYRLRKALGGGMRQAG 158
>SB_17464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/64 (20%), Positives = 29/64 (45%)
Frame = -1
Query: 247 SLATIESM*IWPYLVFTTCLHSVALCTSLHENFLSIFSVSCRHTHDS*FSVKNRTAIKFL 68
S++ ++ M +WP L+ C + LC F+S V + + + ++TA ++
Sbjct: 49 SMSYVDVMLLWPCLMSILCRYGHILCRCYVVIFMSYVDVMLCYVMSRMYKLGHKTATAYV 108
Query: 67 ATGI 56
+
Sbjct: 109 VMSL 112
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 112 HGCACRKR*KWKENFRAKMCTMPHC 186
H C++R + N K C +PHC
Sbjct: 402 HAHKCQRREQQAANGEMKSCNLPHC 426
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 204 CLPPASTVWHCAHLCTKIFFP 142
C+ P +T C H+C K+ P
Sbjct: 1754 CMVPCATRLECGHVCEKVCHP 1774
>SB_43666| Best HMM Match : SAP (HMM E-Value=1.2e-08)
Length = 256
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 126 QETLKMERKFSCKDVHNATLWRQVVNT 206
+E L+ +RK ++ H LWR+ + T
Sbjct: 127 EEELRRQRKLDQQERHKIVLWRRPITT 153
>SB_27444| Best HMM Match : Phage_integrase (HMM E-Value=0.0013)
Length = 940
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 181 VALCTSLHENFLSIFSVSCRHTH 113
V L LH +F S F + C +TH
Sbjct: 541 VGLALQLHHHFASKFLIECLNTH 563
>SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08)
Length = 241
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 254 PVQSCDHRIHVDLALPCVYHLPPQCGIVHIFARKFSFHFQRF 129
P+Q+ H+++ L +P CG H++A HF ++
Sbjct: 108 PIQADGFLSHLEMDLIDFRKIPCNCGRRHLWALHVKDHFSKY 149
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 167 CAQCHTVEAGGKHKVGP 217
C + + V++GG H VGP
Sbjct: 169 CVKIYGVQSGGSHSVGP 185
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = +2
Query: 101 KLTIMGVPAGNAENGKKIF--------VQRCAQCHTVEAGGKHKVGPNL 223
K ++ VP G A+ G KI +++ + TVE KH +GP L
Sbjct: 155 KCAVVDVPFGGAKGGIKIDPSQHSVTELEKITRRFTVELAKKHFIGPGL 203
>SB_51958| Best HMM Match : TBC (HMM E-Value=0.00039)
Length = 491
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 110 IMGVPAGNAENGKKIFVQRCAQ 175
IMG P G A N K ++++ C +
Sbjct: 168 IMGEPGGMAVNPKPLYIRECEE 189
>SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 224 VDLALPCVYHLPPQCGIVHIFARKFSFH 141
V + + VYH C I+H + + SFH
Sbjct: 186 VTINIASVYHFTATCIILHSLSLRVSFH 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,796
Number of Sequences: 59808
Number of extensions: 227545
Number of successful extensions: 497
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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