Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D24
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical ...    75   1e-14
Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical pr...    74   2e-14
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     26   4.7  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    26   4.7  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    26   4.7  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    26   4.7  
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    26   6.2  
AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...    25   8.1  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    25   8.1  
AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical ...    25   8.1  
AF026213-2|AAB71304.2|  191|Caenorhabditis elegans Hypothetical ...    25   8.1  

>AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical
           protein E04A4.7 protein.
          Length = 111

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 33/64 (51%), Positives = 41/64 (64%)
 Frame = +2

Query: 119 VPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSDANKAKGI 298
           +PAG+ E GKK++ QRC QCH V++    K GP LHG  GR +G   GF YS ANK KG+
Sbjct: 4   IPAGDYEKGKKVYKQRCLQCHVVDSTAT-KTGPTLHGVIGRTSGTVSGFDYSAANKNKGV 62

Query: 299 TMGR 310
              R
Sbjct: 63  VWTR 66


>Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical
           protein ZC116.2 protein.
          Length = 123

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 34/64 (53%), Positives = 42/64 (65%)
 Frame = +2

Query: 119 VPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSDANKAKGI 298
           +P G+ E GKKIF QRC QCH V +  + K GP L+G  GR++GQ  GF YS ANK KG+
Sbjct: 14  IPEGDNEKGKKIFKQRCEQCHVVNSL-QTKTGPTLNGVIGRQSGQVAGFDYSAANKNKGV 72

Query: 299 TMGR 310
              R
Sbjct: 73  VWDR 76


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   SIVSCVRVHGCLRITITKIPVARNFIAVLFFTLN*LSW 116
           S+VS    H  L+ + T +P +RN    L   LN + W
Sbjct: 650 SLVSVDSEHSALQRSFTALPSSRNQALALLKLLNRMQW 687


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   SIVSCVRVHGCLRITITKIPVARNFIAVLFFTLN*LSW 116
           S+VS    H  L+ + T +P +RN    L   LN + W
Sbjct: 650 SLVSVDSEHSALQRSFTALPSSRNQALALLKLLNRMQW 687


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -3

Query: 275  PSKKIQGPVQSCDH--RIHV--DLALPCVYHLPPQCGIV 171
            P+K    P++ CDH   +H+  +    C Y  P Q G+V
Sbjct: 1286 PNKFFNSPIEFCDHFDSVHILRNKCQLCSYDAPSQDGMV 1324


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -3

Query: 275  PSKKIQGPVQSCDH--RIHV--DLALPCVYHLPPQCGIV 171
            P+K    P++ CDH   +H+  +    C Y  P Q G+V
Sbjct: 1286 PNKFFNSPIEFCDHFDSVHILRNKCQLCSYDAPSQDGMV 1324


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 120 CLQETLKMERKFSCKD 167
           C++E+LK  RK+ C D
Sbjct: 443 CIEESLKCNRKYDCAD 458


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 120 CLQETLKMERKFSCKD 167
           C++E+LK  RK+ C D
Sbjct: 443 CIEESLKCNRKYDCAD 458


>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 158 VQRCAQCHTVEAGGKHKVG 214
           +  CA+CH V AGG +  G
Sbjct: 54  IWNCAKCHKVVAGGAYVYG 72


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -3

Query: 269 KKIQGPVQSCDHRIHVDLALPCVYHLPP 186
           ++++    SC   +H+++ + C +HL P
Sbjct: 701 RRLESIADSCLLLLHIEIRVHCFFHLAP 728


>AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical
           protein F08F1.4b protein.
          Length = 161

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 72  NFIAVLFFTLN*LSWVCLQETLKMERKFSCKDV 170
           N  + LFFT N LS + +Q+T+    K  C D+
Sbjct: 75  NMNSSLFFTFNVLSLILMQQTVVATGK-QCMDI 106


>AF026213-2|AAB71304.2|  191|Caenorhabditis elegans Hypothetical
           protein F08F1.4a protein.
          Length = 191

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 72  NFIAVLFFTLN*LSWVCLQETLKMERKFSCKDV 170
           N  + LFFT N LS + +Q+T+    K  C D+
Sbjct: 75  NMNSSLFFTFNVLSLILMQQTVVATGK-QCMDI 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,139,993
Number of Sequences: 27780
Number of extensions: 171859
Number of successful extensions: 392
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)