Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D24
         (310 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22840.1 68414.m02852 cytochrome c, putative similar to cytoc...    85   7e-18
At4g10040.1 68417.m01641 cytochrome c, putative similar to cytoc...    83   3e-17
At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin; gl...    29   0.64 
At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP c...    29   0.84 
At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP c...    29   0.84 
At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase...    29   0.84 
At3g13600.1 68416.m01712 calmodulin-binding family protein conta...    28   1.1  
At5g14260.3 68418.m01668 SET domain-containing protein low simil...    28   1.5  
At5g14260.2 68418.m01667 SET domain-containing protein low simil...    28   1.5  
At5g14260.1 68418.m01666 SET domain-containing protein low simil...    28   1.5  
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta...    27   1.9  
At1g61430.1 68414.m06922 S-locus protein kinase, putative simila...    27   2.6  
At1g03106.1 68414.m00287 expressed protein                             27   3.4  
At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putati...    25   7.8  
At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containi...    25   7.8  

>At1g22840.1 68414.m02852 cytochrome c, putative similar to
           cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
          Length = 114

 Score = 85.4 bits (202), Expect = 7e-18
 Identities = 36/59 (61%), Positives = 45/59 (76%)
 Frame = +2

Query: 122 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSDANKAKGI 298
           P GNA+ G+KIF  +CAQCHTVEAG  HK GPNL+G +GR++G   G+SYS ANK K +
Sbjct: 8   PPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAV 66


>At4g10040.1 68417.m01641 cytochrome c, putative similar to
           cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
          Length = 112

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 34/59 (57%), Positives = 44/59 (74%)
 Frame = +2

Query: 122 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSDANKAKGI 298
           P GN + G+KIF  +CAQCHTVE G  HK GPNL+G +GR++G  PG+SYS ANK+  +
Sbjct: 8   PPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKSMAV 66


>At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin;
           glycine-rich protein 17 (GRP17) PMID:11431566; function:
           pollen recognition (PMID:10655594)
          Length = 543

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 191 AGGKHKVGPNLHGFYGRKTGQAPGFSYS 274
           +G KHK+G   HG  G K G+  G S S
Sbjct: 415 SGSKHKIGGGKHGGLGGKFGKKRGMSGS 442



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 194 GGKHKVGPNLHGFYGRKTGQAPG 262
           GGKHK+G   H F G K G   G
Sbjct: 517 GGKHKIGGGKHKFGGGKHGGGGG 539



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 191 AGGKHKVGPNLHGFYGRKTGQAPGFSYSD 277
           +G KHK+G   HG    K G+  G S S+
Sbjct: 469 SGSKHKIGGGKHGGLRGKFGKKRGMSGSE 497


>At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -3

Query: 266 KIQGPVQSCDHRIHVDLALP----CVYHLPPQCGIVHI 165
           K+ G V+  + R+H +L +P    C +HL P  G+VHI
Sbjct: 320 KVNGEVK--EKRLHCELNMPFWSMCEHHLLPFYGVVHI 355


>At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -3

Query: 266 KIQGPVQSCDHRIHVDLALP----CVYHLPPQCGIVHI 165
           K+ G V+  + R+H +L +P    C +HL P  G+VHI
Sbjct: 320 KVNGEVK--EKRLHCELNMPFWSMCEHHLLPFYGVVHI 355


>At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase C
           family protein contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 613

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 77  YCSSIFYAKLTIMGVPAGNAENGKKI 154
           Y    FY K+ I+GVPA NA+   KI
Sbjct: 508 YSPPDFYTKMFIVGVPADNAKKKTKI 533


>At3g13600.1 68416.m01712 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 605

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 119 VPAGNAENGKKIFVQRCAQCHTVEA-GGKHKVGPNLHGFYGR---KTGQAPGFSYSDANK 286
           V  G ++NGK    Q+ A  H +EA   +H+ G NLH +Y +      + P F + D  +
Sbjct: 175 VGKGLSKNGK---AQKLALQHWLEAIDPRHRYGHNLHFYYNKWLHCQSREPFFYWLDIGE 231

Query: 287 AKGITM 304
            K + +
Sbjct: 232 GKEVNL 237


>At5g14260.3 68418.m01668 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 514

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 36  LRITITKIPVARNFIAVLFFTLN*LSWVCLQETLKMERKFSCKDVHNATLWRQVVNTR*- 212
           L +T+ ++ +    IA L  T       CL   L  E+K   K V    + R++   R  
Sbjct: 134 LVVTLERV-LGNETIAELLTTNKLSELACLALYLMYEKKQGKKSVWYPYI-RELDRQRGR 191

Query: 213 GQIYMDSMVARLDRPLDFLTRMPTKLKVL 299
           GQ+  +S +   +  LD+LT  PTK +VL
Sbjct: 192 GQLDAESPLLWSEAELDYLTGSPTKAEVL 220


>At5g14260.2 68418.m01667 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 514

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 36  LRITITKIPVARNFIAVLFFTLN*LSWVCLQETLKMERKFSCKDVHNATLWRQVVNTR*- 212
           L +T+ ++ +    IA L  T       CL   L  E+K   K V    + R++   R  
Sbjct: 134 LVVTLERV-LGNETIAELLTTNKLSELACLALYLMYEKKQGKKSVWYPYI-RELDRQRGR 191

Query: 213 GQIYMDSMVARLDRPLDFLTRMPTKLKVL 299
           GQ+  +S +   +  LD+LT  PTK +VL
Sbjct: 192 GQLDAESPLLWSEAELDYLTGSPTKAEVL 220


>At5g14260.1 68418.m01666 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 514

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 36  LRITITKIPVARNFIAVLFFTLN*LSWVCLQETLKMERKFSCKDVHNATLWRQVVNTR*- 212
           L +T+ ++ +    IA L  T       CL   L  E+K   K V    + R++   R  
Sbjct: 134 LVVTLERV-LGNETIAELLTTNKLSELACLALYLMYEKKQGKKSVWYPYI-RELDRQRGR 191

Query: 213 GQIYMDSMVARLDRPLDFLTRMPTKLKVL 299
           GQ+  +S +   +  LD+LT  PTK +VL
Sbjct: 192 GQLDAESPLLWSEAELDYLTGSPTKAEVL 220


>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
           domain-containing protein / cell division
           protein-related similar to GlsA [Volvox carteri f.
           nagariensis] GI:4633129; contains Pfam profiles PF00226
           DnaJ domain, PF00249 Myb-like DNA-binding domain
          Length = 663

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +2

Query: 65  GQEFYCSSIFYAKLTIMGVPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRK 244
           G+ F+  S       +   PAG+A +   + +  CA+  T + GG  KVG +    Y   
Sbjct: 47  GKPFFAFSNCLPVKALNREPAGHAFHSAALKLHGCAEEPTDDEGGDKKVGDDKEKEY--- 103

Query: 245 TGQAPGFSYSDANKAK 292
               P F+ S ANK K
Sbjct: 104 ---VPSFN-SYANKGK 115


>At1g61430.1 68414.m06922 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 806

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 260 QGPVQSCD-HRIHVDLALPCVYHLPPQCGIVHIFARKFSFHFQR 132
           +GP  SCD + +     L CV  +PP+C     F  KF+  +++
Sbjct: 275 EGPANSCDIYGVCGPFGL-CVVSIPPKCKCFKGFVPKFAKEWKK 317


>At1g03106.1 68414.m00287 expressed protein
          Length = 65

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 195 PASTVWHCAHLCTKIFFPFSAF 130
           PAS VW   H   K  FPF+A+
Sbjct: 22  PASKVWLKTHFHLKFRFPFAAY 43


>At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]
          Length = 759

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 77  YCSSIFYAKLTIMGVPAGNAENG 145
           +CS I Y  L I+GV AG+ + G
Sbjct: 177 FCSVINYICLRILGVEAGHDDKG 199


>At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containing
           protein strong similarity to PCMP-H2 [Arabidopsis
           thaliana] GI:5050911; contains Pfam profile PF01535: PPR
           repeat
          Length = 783

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 214 PYLVFTTCLHSVALCTSLHENFL 146
           P   F +C+HS A  T LH N L
Sbjct: 12  PLKPFGSCIHSYADRTKLHSNLL 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,700,707
Number of Sequences: 28952
Number of extensions: 158554
Number of successful extensions: 391
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)