Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D23
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    31   0.12 
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.0  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    26   3.5  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   6.1  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   8.0  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   8.0  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 402 RGTWDRRVMARPDQS*PTYRTGPTQLPRIQTGYLSLESV 286
           +GTWDR+ +  P    P+    P+ +PR Q G  S+E++
Sbjct: 507 KGTWDRQSLPPPQ---PSISRRPSVIPRPQEGSKSMEAI 542


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 270 RLLQPPTGISQ*PELQAL*PRHQAPPGLPRRISRWSTWLSQTPG 139
           R + PP G S         P   APPGL R +S  ++  S  PG
Sbjct: 418 RSVPPPPGFSTNAPKAVKSPEISAPPGLYRGLSSGASIPSAPPG 461


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -3

Query: 170 DGRHGSRKHPVY--KSCSD 120
           DG HG  +HPVY  + C+D
Sbjct: 191 DGAHGVHEHPVYDIEECAD 209


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 345 YTLAMTDPDAPSRADPKFREWHHWLVANVP 434
           Y++   D D P+    +F    +WL+ N+P
Sbjct: 235 YSVITLDLDVPNYETNRFETHCNWLLTNIP 264


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 101 PSDHSRYRYMIYKPGVCESHVDHREIL 181
           PSD  +  Y   KPG  ES V+H +++
Sbjct: 505 PSDSRKITYR--KPGFLESFVEHNKLM 529


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 429 VPGNNVAAGETLSEYVGSG 485
           VP NN+A G   ++Y G G
Sbjct: 48  VPVNNIAGGYPYAQYTGQG 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,968
Number of Sequences: 5004
Number of extensions: 36221
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)