Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D23
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)                   36   0.023
SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043)                   32   0.29 
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)                 27   6.2  

>SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)
          Length = 115

 Score = 35.5 bits (78), Expect = 0.023
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 363 DPDAPSRADPKFREWHHWLVANVPGNNVA 449
           DPDAPS    ++R W H+L  N+P + +A
Sbjct: 4   DPDAPSPIRHQYRSWLHYLKVNIPSDELA 32


>SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043)
          Length = 630

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -3

Query: 245 FHSSQSCRRFSH----DIRHHLVCLEGFHDGRHGSRKHPVYKSCSDI*NDR*VIIDFKI 81
           FH  Q+C+ F        R+ L  + G    R GS+ H  + SC D+ ND  +I+DF +
Sbjct: 262 FHGPQNCKYFFCFPFVRYRNSLGLISGTPRYRFGSQDH--FGSCKDLHNDYTIIVDFGV 318


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 336 PTQLPRIQTGYLSLESVSAHYLRLLQPPTGISQ*PELQAL*PRHQAPPGLP 184
           PT+ P ++ G  S ++   + +  + PP    Q PE+  L P HQ  PG+P
Sbjct: 228 PTEGP-VELGS-SPQATRPYVVPNIVPPQEPEQPPEVAGLVPPHQPAPGIP 276


>SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)
          Length = 807

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -3

Query: 350 RIELVRRSFPGYRRDIFHLSRCQL--ITFVYFNPRRVFHSSQSCRRFSHDIRHHLVCLEG 177
           R +  R+  PG R  +F + RC+   + F   + R   H+ +  RR    +R  ++ ++G
Sbjct: 35  RAKTARKVIPGTRHQLFAIRRCETNGVCFATRSQRCPQHTDEQ-RRL---VRLRMLDVDG 90

Query: 176 FHDG 165
           + DG
Sbjct: 91  YEDG 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,008
Number of Sequences: 59808
Number of extensions: 301080
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)