Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D23
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   5.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   5.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   5.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.0  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 6   VLIHLFISYKY*LYNSI*NECSVGNNLKVNNN 101
           ++  L  +YKY  YN+  N  +   N   NNN
Sbjct: 81  IISSLSNNYKYSNYNNYNNNYNNNYNNNYNNN 112


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 6   VLIHLFISYKY*LYNSI*NECSVGNNLKVNNN 101
           ++  L  +YKY  YN+  N  +   N   NNN
Sbjct: 81  IISSLSNNYKYSNYNNYNNNYNNNYNNNYNNN 112


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 42  LYNSI*NECSVGNNLKVNNN 101
           + +S+ N C+  NN   NNN
Sbjct: 303 IISSLSNSCNYSNNYYNNNN 322


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 72  VGNNLKVNNNLAIILDIAT*FINRVF 149
           +GNN  ++    II+D+ T  I R++
Sbjct: 134 LGNNTVIHQPRIIIIDLKTDKILRIY 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,972
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)