Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D23
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18100.1 68414.m02244 mother of FT and TF1 protein (MFT) iden...    72   2e-13
At2g27550.1 68415.m03338 centroradialis protein, putative (CEN) ...    59   1e-09
At1g65480.1 68414.m07429 flowering locus T protein (FT) identica...    58   3e-09
At5g03840.1 68418.m00354 terminal flower 1 protein (TFL1) identi...    57   5e-09
At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT) id...    56   1e-08
At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1 ...    56   2e-08
At1g27340.1 68414.m03330 F-box family protein contains Pfam PF00...    29   1.7  
At4g00740.1 68417.m00101 dehydration-responsive protein-related ...    28   2.9  

>At1g18100.1 68414.m02244 mother of FT and TF1 protein (MFT)
           identical to SP|Q9XFK7 MOTHER of FT and TF1 protein
           {Arabidopsis thaliana}; contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 173

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +3

Query: 264 VNEGNELTPTQVKDIPSVSWEAASDQFYTLAMTDPDAPSRADPKFREWHHWLVANVP-GN 440
           +  G E+ P+   + P V+    SD+ YTL MTDPDAPS ++P  REW HW+V ++P G 
Sbjct: 36  ITNGCEIKPSTAVNPPKVNISGHSDELYTLVMTDPDAPSPSEPNMREWVHWIVVDIPGGT 95

Query: 441 NVAAGETLSEYV 476
           N + G+ +  Y+
Sbjct: 96  NPSRGKEILPYM 107


>At2g27550.1 68415.m03338 centroradialis protein, putative (CEN)
           strong similarity to SP|Q41261 CENTRORADIALIS protein
           {Antirrhinum majus}; contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 175

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = +3

Query: 246 YPSGVEVNEGNELTPTQVKDIPSVSWEAASDQ-FYTLAMTDPDAPSRADPKFREWHHWLV 422
           Y S  +V  G+EL P+ V   P V       + F+TL MTDPD P  +DP  RE  HW+V
Sbjct: 32  YNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIV 91

Query: 423 ANVPG-NNVAAGETLSEY 473
            ++PG  +V+ G+ +  Y
Sbjct: 92  TDIPGTTDVSFGKEIIGY 109


>At1g65480.1 68414.m07429 flowering locus T protein (FT) identical
           to SP|Q9SXZ2 FLOWERING LOCUS T protein {Arabidopsis
           thaliana}; contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 175

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +3

Query: 261 EVNEGNELTPTQVKDIPSVSWEAAS-DQFYTLAMTDPDAPSRADPKFREWHHWLVANVP 434
           EV  G +L P+QV++ P V         FYTL M DPD PS ++P  RE+ HWLV ++P
Sbjct: 36  EVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIP 94


>At5g03840.1 68418.m00354 terminal flower 1 protein (TFL1) identical
           go SP|P93003 TERMINAL FLOWER 1 protein {Arabidopsis
           thaliana}; contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 177

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +3

Query: 261 EVNEGNELTPTQVKDIPSVSWEAAS-DQFYTLAMTDPDAPSRADPKFREWHHWLVANVPG 437
           +V+ G+EL P+ V   P V         F+TL M DPD P  +DP  +E  HW+V N+PG
Sbjct: 39  QVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPG 98

Query: 438 NNVAA-GETLSEY 473
              A  G+ +  Y
Sbjct: 99  TTDATFGKEVVSY 111


>At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT)
           identical to SP|Q9FIT4 BROTHER of FT and TFL1 protein
           {Arabidopsis thaliana}; contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 177

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +3

Query: 246 YPSGVEVNEGNELTPTQVKDIPSVSWEAAS-DQFYTLAMTDPDAPSRADPKFREWHHWLV 422
           + S   V+ G+EL P+ +   P V         F+TL M DPDAPS ++P  RE+ HW+V
Sbjct: 31  FNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSFFTLIMMDPDAPSPSNPYMREYLHWMV 90

Query: 423 ANVPGNNVAA-GETLSEY 473
            ++PG   A+ G  +  Y
Sbjct: 91  TDIPGTTDASFGREIVRY 108


>At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1
           like protein identical to SP|Q9S7R5 TWIN SISTER of FT
           protein (TFL1 like protein) {Arabidopsis thaliana};
           contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 175

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
 Frame = +3

Query: 261 EVNEGNELTPTQVKDIPSVSWEAASDQF---YTLAMTDPDAPSRADPKFREWHHWLVANV 431
           EV  G +L P+QV + P V  E   D F   YTL M DPD PS ++P  RE+ HWLV ++
Sbjct: 36  EVTNGLDLRPSQVLNKPIV--EIGGDDFRNFYTLVMVDPDVPSPSNPHQREYLHWLVTDI 93

Query: 432 P 434
           P
Sbjct: 94  P 94


>At1g27340.1 68414.m03330 F-box family protein contains Pfam
           PF00646: F-box domain; similar to fim protein; similar
           to ESTs gb|T42445, gb|T76780, gb|AA650733, and
           emb|Z17748
          Length = 467

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 FYTLAMTDPDAPSRADPKFREWHHWLVANVPGNNV 446
           FYT+   + ++    DP  ++WHH ++  +P  ++
Sbjct: 170 FYTITHENVNSGQVYDPSLKKWHHPIIPALPKKSI 204


>At4g00740.1 68417.m00101 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 335 RRSFPGYRRDIFHLSRCQLITFVYFN 258
           R  FP Y  D+ H SRC LI F  +N
Sbjct: 259 RLPFPAYSFDLMHCSRC-LIPFTAYN 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,777,272
Number of Sequences: 28952
Number of extensions: 201791
Number of successful extensions: 485
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)