Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D22
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   1.1  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   1.9  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   2.5  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    24   3.2  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    24   4.3  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    24   4.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    23   5.7  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    23   5.7  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    23   5.7  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    23   5.7  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    23   7.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   9.9  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    23   9.9  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 2   LLSVYIAKGVSMSNFKPVECLNTCGDK*LRSFWRDLSLTFSNC 130
           LL++ I   +S+  FKP+E          RSFWR L  TF  C
Sbjct: 816 LLALEILIFLSIKLFKPLELT--------RSFWRTLVSTFCRC 850


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 241 SSIINLNLNTIAKLFHTNATKIT*YRVKYTSFNELKKTIAKCQTE 107
           S +IN N  TI  L + N    T Y   Y  +N  K+    C+ E
Sbjct: 483 SQVINHNAETICNLLYQNPKIKTLY---YPKYNTSKEHFEACRRE 524


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 8   SVYIAKGVSMSNFKPVE 58
           S+Y+ +G+    FKP+E
Sbjct: 325 SIYVPEGIDTDQFKPIE 341


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 238 SIINLNLNTIAKLFHTNATKIT*YRVKYTSFNELKKTIA 122
           SI NL L +  KLF +  T++  Y++K    N  KK I+
Sbjct: 188 SITNLILYSPKKLFVSTTTQVMVYKIK----NNTKKVIS 222


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 89  RSFWRDLSLTFSNCFL 136
           + F  D++L FSNCFL
Sbjct: 149 QEFIDDMNLMFSNCFL 164


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 109 EIPPKTPKLLITTS 68
           E+PPK P +LIT S
Sbjct: 217 EVPPKRPDVLITES 230


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 113 LTFSNCFL*FIKTCVLD 163
           + FSNCF  +I  C+L+
Sbjct: 794 INFSNCFTYWIINCILE 810


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 157 YTSFNELKKTIAKCQTEIPP 98
           +T F ELKK + +   ++PP
Sbjct: 155 FTQFAELKKLLCRQAPDVPP 174


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 95  FWRDLSLTFSNCFL 136
           F  D++L FSNCFL
Sbjct: 296 FIDDMNLMFSNCFL 309


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 253 CYALSSIIN--LNLNTIAKLFHTNATKIT*YRVKYTSFNELKKTIAKCQT 110
           C +LS I    + L   + L + N  +     VK  SF+E +K +  C T
Sbjct: 126 CRSLSDIEKDGVTLEEFSCLANCNGLRTITKCVKDVSFDEFRKDVISCST 175


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 132 KQLLNVRLRSRQKLLSYLSPQVFKHSTGLKFDIDTPFA 19
           + L N   +S+QK L +L PQ    S    F +   F+
Sbjct: 578 RPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFS 615


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 59  CLNTCGDK*--LRSFWRDLSLTFSNCFL*FIKTCVLDSISCNLS 184
           CL +  DK     S W ++   F N     I+T   DS+S NLS
Sbjct: 458 CLQSVFDKNSDFASLWNEVLFGFFNDESMDIETIPFDSLSRNLS 501


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 117 HLAIVFFNSLKLVYLTLYHVI 179
           H  ++FF+  K+ ++TL HV+
Sbjct: 314 HPDLLFFDVQKISWITLAHVV 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 928,339
Number of Sequences: 5004
Number of extensions: 14377
Number of successful extensions: 51
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)