Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D22
         (269 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0814 - 6464072-6464544,6464770-6465208                           27   2.1  
12_01_1095 + 11436012-11436053,11436322-11436595,11470730-114707...    25   8.3  
09_01_0001 - 66206-66907                                               25   8.3  
08_01_0748 + 7034074-7034076,7034136-7034876                           25   8.3  

>07_01_0814 - 6464072-6464544,6464770-6465208
          Length = 303

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 139 LKKTIAKCQTEIPPKTPKLLIT 74
           L+K +A+ + E PP TPKL +T
Sbjct: 216 LQKELAELKGETPPPTPKLRLT 237


>12_01_1095 +
           11436012-11436053,11436322-11436595,11470730-11470762,
           11470770-11471494
          Length = 357

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 139 LKKTIAKCQTEIPPKTPKL 83
           L+K +A+ + E PP TPKL
Sbjct: 270 LQKELAELKGETPPPTPKL 288


>09_01_0001 - 66206-66907
          Length = 233

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 139 LKKTIAKCQTEIPPKTPKL 83
           L+K +A+ + E PP TPKL
Sbjct: 146 LQKELAELKGETPPPTPKL 164


>08_01_0748 + 7034074-7034076,7034136-7034876
          Length = 247

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 139 LKKTIAKCQTEIPPKTPKL 83
           L+K +A+ + E PP TPKL
Sbjct: 160 LQKELAELKGETPPPTPKL 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,327,374
Number of Sequences: 37544
Number of extensions: 74410
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)