Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D22
         (269 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   3.1  
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_54437| Best HMM Match : DUF226 (HMM E-Value=2)                      26   4.1  
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         25   7.2  
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 126  IVFFNSLKLVYLTLYHVILV 185
            +VFF+SLKL+ L L HV +V
Sbjct: 2053 LVFFSSLKLMKLVLLHVRVV 2072


>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 163 VKYTSFNELKKTIAKCQTEIPPKTPKLLIT 74
           V  T     +KTIA+C TE+  K P +L T
Sbjct: 403 VYLTKLRFYEKTIARCITELMAKDPWILTT 432


>SB_54437| Best HMM Match : DUF226 (HMM E-Value=2)
          Length = 364

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +2

Query: 32  SMSNFKPVECLNTCG--DK*LRSFWRDLSLTFSNCF 133
           ++ NFKP +   T G   +  R FW DL     NCF
Sbjct: 299 ALKNFKPNKTPGTDGLSMEFYRYFWEDLKTIVVNCF 334


>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -3

Query: 75  PQV-FKHSTGLKFDIDTPF 22
           PQ+ FKH+  ++FDIDT F
Sbjct: 224 PQITFKHTVTVRFDIDTFF 242


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 169  YRVKYTSFNELKKTIAKCQTEIPPKTPKLLITTSI*TLNWLEI*HR 32
            +RV+Y S ++ +    KC +++ P   KLL  +   TL +    HR
Sbjct: 890  FRVRYKSTDKEETICIKCLSQVEPLLDKLLSVSHQSTLQYHTGPHR 935


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 125 NCFL*FIKTCVLDSISCNLSGVCVK*FSYC 214
           +CF+   + C  + + C  SG CV+    C
Sbjct: 111 DCFIDVARNCTANEVRCKNSGHCVQQQQVC 140


>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 50  PVECLNTCGDK*LRSFWRDLSLTFSNCFL*FIKTCVLDSISC 175
           P+EC+N CG K +     ++    S C L  +  C+   I C
Sbjct: 219 PIECVNKCGAKDIPR--EEMPFHMSECPL-AVHPCMYRDIGC 257


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 106 IPPKTPKLLITTSI 65
           +PP+ PK+L+TTS+
Sbjct: 19  LPPENPKVLLTTSL 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,664,856
Number of Sequences: 59808
Number of extensions: 99997
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)