Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D22
         (269 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot...    25   5.2  
At3g45740.1 68416.m04943 hydrolase family protein / HAD-superfam...    25   6.8  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    25   9.0  
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ...    25   9.0  

>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
           similar to serine carboxylase II-3 GB:CAA55478 GI:474392
           from [Hordeum vulgare]
          Length = 479

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 259 NVCYALSSIINLNLNTIAKLFHTNATKI 176
           +VC +    + LNL  + K  H N TK+
Sbjct: 318 DVCMSFEEQLYLNLPEVQKALHANRTKL 345


>At3g45740.1 68416.m04943 hydrolase family protein / HAD-superfamily
           protein contains TIGRfam domians  TIGR01460:
           HAD-superfamily hydrolase, subfamily IIA and TIGR01456:
           HAD-superfamily subfamily IIA hydrolase, TIGR01456,
           CECR5
          Length = 376

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 135 RKQLLNVRLRSRQKLLSYLSPQVFKHSTGLKFDID 31
           R++  N+R  SR    S +SP+  + S G+ FDID
Sbjct: 13  RRRNFNLRPPSRS-FSSTISPESNRSSFGIAFDID 46


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
           to pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1406

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 26  GVSMSNF-KPVECLNTCGDK*LRSFWRDLSLTFSN 127
           G +M  F   V    TC DK LR  ++ L +TF N
Sbjct: 784 GTTMERFFDRVVTTRTCNDKKLRIPFKPLYMTFEN 818


>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 259

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 177 LHDIESSTQVLMN*RKQLLNVRLRSRQK 94
           +HD+   T  L   +++L NV ++ +QK
Sbjct: 17  VHDVSKVTDPLQKAKRELDNVEIKEKQK 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,609,917
Number of Sequences: 28952
Number of extensions: 68078
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 212138304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)