Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D21
         (552 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   3.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.2  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   9.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -1

Query: 471 HHTPTNRVEWIRDDTGDCGD--GLR 403
           H  PT  + W+R D    GD  GLR
Sbjct: 48  HGNPTPDIIWVRSDGTAVGDVPGLR 72


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 435 DDTGDCGDGLRDGPADDDGG 376
           DD+G    G RDG   D GG
Sbjct: 89  DDSGGGRGGGRDGDRGDGGG 108


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 381 HRHQLGHRANRHHSR 425
           H HQ G  A  HH +
Sbjct: 14  HHHQSGSVAGHHHEQ 28


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 372 EHPHRHQ 392
           EHPH+HQ
Sbjct: 22  EHPHQHQ 28


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 372 EHPHRHQ 392
           EHPH+HQ
Sbjct: 22  EHPHQHQ 28


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 302 PCTDTPKPLYRPVRPSD 252
           P + TP P+  P  P D
Sbjct: 312 PYSGTPTPMMSPAPPQD 328


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -2

Query: 494 LLARPDCIIIRLRTVSNGYEMIPATVVTVCAM 399
           L  R +C+   +    NG  M P   VT   +
Sbjct: 37  LWLRFECLTNEMIVTKNGRRMFPVVKVTAAGL 68


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 67  CQHHQGTPACTCP*KRS 17
           CQ   G  AC CP K +
Sbjct: 432 CQDKLGDYACYCPPKHT 448


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,676
Number of Sequences: 336
Number of extensions: 2581
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)