Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D21
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   335   2e-94
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   335   2e-94
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  335 bits (823), Expect = 2e-94
 Identities = 153/184 (83%), Positives = 164/184 (89%)
 Frame = +1

Query: 1   PTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLA 180
           PTQALNFAFKDKYKQVFLGGVDKNTQF RYF            TSLCFVYPLDFARTRLA
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLA 144

Query: 181 ADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGML 360
           ADVGK  G+REFTGLGNC++KIFK+DG+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGML
Sbjct: 145 ADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGML 204

Query: 361 PDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYENTIHCWATIA 540
           PDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILY++T+HCWATI 
Sbjct: 205 PDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIY 264

Query: 541 KTEG 552
           KTEG
Sbjct: 265 KTEG 268



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
 Frame = +1

Query: 205 QREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKNT 378
           ++ + G+ +C  +I K  G    +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 379 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYENTIHCWATIAKT 546
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 547 EG 552
           +G
Sbjct: 170 DG 171



 Score = 28.3 bits (60), Expect = 0.055
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 148 YPLDFARTRLAADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRG 282
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  335 bits (823), Expect = 2e-94
 Identities = 153/184 (83%), Positives = 164/184 (89%)
 Frame = +1

Query: 1   PTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLA 180
           PTQALNFAFKDKYKQVFLGGVDKNTQF RYF            TSLCFVYPLDFARTRLA
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLA 144

Query: 181 ADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGML 360
           ADVGK  G+REFTGLGNC++KIFK+DG+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGML
Sbjct: 145 ADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGML 204

Query: 361 PDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYENTIHCWATIA 540
           PDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILY++T+HCWATI 
Sbjct: 205 PDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIY 264

Query: 541 KTEG 552
           KTEG
Sbjct: 265 KTEG 268



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
 Frame = +1

Query: 205 QREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKNT 378
           ++ + G+ +C  +I K  G    +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 379 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYENTIHCWATIAKT 546
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 547 EG 552
           +G
Sbjct: 170 DG 171



 Score = 28.3 bits (60), Expect = 0.055
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 148 YPLDFARTRLAADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRG 282
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 378 PHRHQLGHRANRHHSRRYH 434
           PH H +GH  +  H+  +H
Sbjct: 414 PHHHTMGHGHSHIHATPHH 432


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 372 EHPHRHQLGHRANRHHSRRYHLVSIRHGS*AYDDAVRPCQERHSLREHH 518
           EHPH+HQ  + A     ++    S++  S    D   P   R  +  HH
Sbjct: 19  EHPHQHQQHYGAAVQVPQQTQ--SVQQQSQQAGDPCDPSLLRQGVPGHH 65


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 448 DTVRRRMMMQSGRAKSDILYENTI 519
           DT+ R+ ++   + K D LY N +
Sbjct: 289 DTLIRKYIIPKEQVKEDSLYTNIV 312


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 249 EDLADAVTETGELALPITLANIGGETC 169
           E + D V   GE+A  ++  +  GE C
Sbjct: 498 EGIVDIVMANGEVATSLSDGSYFGEIC 524


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 249 EDLADAVTETGELALPITLANIGGETC 169
           E + D V   GE+A  ++  +  GE C
Sbjct: 466 EGIVDIVMANGEVATSLSDGSYFGEIC 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,737
Number of Sequences: 438
Number of extensions: 3335
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)