Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D19
(478 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43990.2 68418.m05382 SET domain-containing protein identical... 33 0.13
At5g43990.1 68418.m05383 SET domain-containing protein identical... 33 0.13
At5g40480.1 68418.m04909 expressed protein ; expression supporte... 30 0.70
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ... 27 6.6
At1g12120.1 68414.m01404 expressed protein contains Pfam domain ... 27 6.6
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar... 27 8.7
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar... 27 8.7
At3g05150.1 68416.m00559 sugar transporter family protein simila... 27 8.7
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 124 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD 303
++ V +AGE +DGT+ + + +HKL+A +++ ++L ++ +G V
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 276
Query: 304 NVNRHGAT-LTNTHIPGI 354
N++ AT +N H+P +
Sbjct: 277 NLSFAPATGGSNPHLPSM 294
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 124 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD 303
++ V +AGE +DGT+ + + +HKL+A +++ ++L ++ +G V
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 253
Query: 304 NVNRHGAT-LTNTHIPGI 354
N++ AT +N H+P +
Sbjct: 254 NLSFAPATGGSNPHLPSM 271
>At5g40480.1 68418.m04909 expressed protein ; expression supported by
MPSS
Length = 1919
Score = 30.3 bits (65), Expect = 0.70
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 262 QIKLGAATAGLVYDNVNRHGATLTNTHIPGIGDKLSVAGKVNLFHNNDH 408
Q K+ +Y V+ G TLTN H+P G K V + N F +H
Sbjct: 1597 QTKVTVLFGNTIY--VDSPGETLTNVHVPAEGYKFPVKFRENKFAVTEH 1643
>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
contains tubulin-tyrosine ligase family domain,
Pfam:PF03133
Length = 867
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 382 VNLFHNNDHDLSAKAFATRNMPTISHL 462
++L + + H+L KAF+ MP +SHL
Sbjct: 281 LDLSNRSIHNLVNKAFSVHEMPLLSHL 307
>At1g12120.1 68414.m01404 expressed protein contains Pfam domain
PF05904: Plant protein of unknown function (DUF863)
Length = 483
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 250 DLTNQIKLGAATAGLVYDNVNRH--GATLTNTHIPGIGDKLSVAGKVNLFHNNDHDLSAK 423
D ++ ++G A G YD+ RH G + TNT +++ N+ +N+ ++ K
Sbjct: 347 DFPDKPEMGKAKPGCSYDSYERHTLGISETNTEEDFCVSSMALDELNNITRDNNKEIGLK 406
Query: 424 AFATRNM 444
R M
Sbjct: 407 LRRGRRM 413
>At4g28760.2 68417.m04113 expressed protein predicted protein.
Arabidopsis thaliana
Length = 924
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 125 PVPGCAGKRVNL 160
PVPGC GK VNL
Sbjct: 15 PVPGCLGKMVNL 26
>At4g28760.1 68417.m04112 expressed protein predicted protein.
Arabidopsis thaliana
Length = 924
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 125 PVPGCAGKRVNL 160
PVPGC GK VNL
Sbjct: 15 PVPGCLGKMVNL 26
>At3g05150.1 68416.m00559 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 470
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 226 KLSALGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPGIG 357
+ S GS+ L LGA T+G + D + R GA ++ I IG
Sbjct: 73 QFSVFGSI-LNMGAVLGAITSGKISDFIGRKGAMRLSSVISAIG 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,174,943
Number of Sequences: 28952
Number of extensions: 192658
Number of successful extensions: 454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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