Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D18
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)            77   8e-15
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      36   0.031
SB_42831| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   29   2.1  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32)                   28   4.8  
SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)                 27   8.3  
SB_29100| Best HMM Match : TPMT (HMM E-Value=5.4e-33)                  27   8.3  

>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
          Length = 382

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
 Frame = +3

Query: 33  MSVIEVHHTTIEEVRREIARDQYSE--TALLYDELIGSVDQRTYEYKHFFGDILRANGCL 206
           MS+  V+ T    V      DQY++   A ++   IG   +RT  Y+ FF ++LR     
Sbjct: 149 MSMDGVYRTRSLGVPATGIPDQYADGKAAKVWQHYIGGHKKRTESYREFFCNLLRERNIH 208

Query: 207 KVLDVACGTGVDSMLLLEQGFELVSTDGSEQMLEFARKAKLRNRNDSRYREW 362
            VLDV+CGTGVDS++LLE GF + S D S++ML+ A + +   R +  + +W
Sbjct: 209 NVLDVSCGTGVDSIMLLENGFCVTSVDASDKMLKDALRIRWNRRKEEPFDKW 260


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
 Frame = +3

Query: 99  YSETALLYDELIGSVDQRTYEYKHFFGDI----LRANGC---LKVLDVACGTGVDSMLLL 257
           Y ETA+ YD+ +   D R Y        I    L++ G     ++LDV  GTG+ +  L+
Sbjct: 28  YDETAIHYDKYVK--DARGYIGPEVAASITAKFLKSQGFSEDCRILDVGSGTGLQAEGLV 85

Query: 258 EQGF-ELVSTDGSEQMLEFARKAKLRNRNDSRYRE 359
           + GF  + + D SE+  E ARK  L     + Y E
Sbjct: 86  KHGFTNIDALDPSEKSHEVARKKNLYKNYITDYLE 120


>SB_42831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 277 TNSNPCSNSNIESTPVPHATSSTLRQPFARKISPKKCLYSYVRWSTLPISSSYNKAVS 104
           TNS+    + ++     H T+  L  P+    +     Y Y   +TLP+SS YN  ++
Sbjct: 5   TNSSSVPINTLQQYHFQHLTTLPLSTPYNTTTTNTLQHYHYQHLTTLPLSSPYNTTIN 62


>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 147 QRTYEYKHFFGDILRANGCLKVLDVACGTGVDSMLLLEQGFELV 278
           QR   YK    + + +NGC  VLD+  G+G+ SM  ++ G + V
Sbjct: 145 QRNLAYKKAISNAV-SNGCDIVLDIGSGSGILSMFAVQAGAKKV 187


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
 Frame = +3

Query: 66  EEVRREIARDQYSETALL-YDELIGS--VDQRTYEYKHFFGDILRANGCLKVLDVACGTG 236
           +E +  +  +QY+ + +L Y+ + G   V     E    F ++L      KVLDV CG G
Sbjct: 7   KEFQSFLDNNQYTSSGILRYERVFGRGFVSTGGLETTKEFVEMLNLAPGQKVLDVGCGIG 66

Query: 237 VDSMLLLEQ-GFELVSTDGSEQMLEFARKAKLRNRNDS-RYREWIITKANWKTLTDDI 404
             +  +++    E+ + D S  M+E  ++       D   +    IT A ++  T D+
Sbjct: 67  GSAFYMIKNFHVEVRAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDITSAKYEPGTFDV 124


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 93  DQYSETALLYDELIGSVDQRT-YEYKHFFGDILRANGCLKVLDVACGTGVDSMLLLEQG 266
           D Y ++   +DE+     + + Y  KH F D +       VLDV CGTG+ SM   + G
Sbjct: 155 DYYFDSYAHFDEVRTLTYRNSMYHNKHLFRDKI-------VLDVGCGTGILSMFAAKAG 206


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 304 SICSEPSVETNSNPCSNSNIESTPVPHATSSTL 206
           S  S+P  ET S P +N+ + STP     SS+L
Sbjct: 262 SSSSQPPTETPSPPQTNAEVSSTPETQQDSSSL 294


>SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32)
          Length = 1556

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 204 LKVLDVACGTGVDSMLLLEQGFELV-STDGSEQMLEFARKAKL 329
           L+V+D   GTG+    L + G+  V   D S++ML  AR+ ++
Sbjct: 194 LRVMDAGAGTGIVGEHLQQLGYTNVDGLDISQEMLNIARQKRV 236


>SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = -1

Query: 385 FQFAFVMIHSLYLESFLLRSFAFLANSSICSEPSVETNSNPCSNSNIESTPVPHATSSTL 206
           F   F++  + +  +    SF+ LANS+  +  S+ ++++ C N     T  P  TSS L
Sbjct: 163 FSTTFLLKETEFNTNAQENSFSLLANST--NNTSINSDADECMNI----TAAPLFTSSPL 216

Query: 205 RQPFARKISPKKCL 164
                 KI+  KC+
Sbjct: 217 PSTRRGKINKLKCM 230


>SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 136 VAWTNGHTSTSISLVIFYVQTAALRCSTSHAELVLI 243
           VAWT  +    + LV + V    +RC  S +E V+I
Sbjct: 492 VAWTVWYAVLGVFLVAYVVMELRIRCRRSPSEAVVI 527


>SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)
          Length = 546

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 141 RYQSARHIIKPFLNTDPWLFPFLLPQSWCGGL 46
           RY +  H +KP L     L   LLP SW   L
Sbjct: 345 RYMTIVHCMKPHLRLTRSLASILLPASWVAAL 376


>SB_29100| Best HMM Match : TPMT (HMM E-Value=5.4e-33)
          Length = 242

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 207 KVLDVACGTGVDSMLLLEQGFELVSTDGSEQMLE 308
           +VL   CG  +D + L +QG ++V  +G+ + +E
Sbjct: 55  RVLLPLCGKSLDLLWLADQGCQVVGVEGASKPIE 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,153,329
Number of Sequences: 59808
Number of extensions: 374154
Number of successful extensions: 1525
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)