Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D17
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 29 0.37
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 0.84
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 1.1
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 2.0
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 2.6
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.5
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 26 4.5
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 6.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.0
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.0
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 25 6.0
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 6.0
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 6.0
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 7.9
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 29.5 bits (63), Expect = 0.37
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 258 RFLDIFEKTFVQSLQKGKFESYGKKKLQ 341
+FL+I+ +T + L G E GKKKL+
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLE 633
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 28.3 bits (60), Expect = 0.84
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 353 RSYEIVARHVLGAAPKPFDKHTFMPSALD----FYQTALRDPAF-YQLYDRIVGYINAFK 517
+++E +R+V+ A P D +TF S LD + F Q +DR V Y+N +
Sbjct: 135 QTFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSFGSSVANFTLQAHDRGVNYVNYYP 194
Query: 518 HYLKPY 535
KPY
Sbjct: 195 AGDKPY 200
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +1
Query: 37 LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 147
LSI+ AK TI + + + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 177 LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 269
L+ SYY PF DN ++ V YEA + +
Sbjct: 20 LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 535 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 398
I Q L+ + TH NPV EC +S+C L K G E L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 123 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 215
G P+ +Y P + YYP +Y P +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 358 RSLIILCNFFLPYDSNLPFCRDCTKVFSKMSK 263
+S +C LP D + C+DC++ F ++ K
Sbjct: 602 KSFCTICMAELPPDFHEKKCKDCSRNFKELDK 633
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 359 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 463
Y +ARH L + FD HTF + FY T RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 258 RFLDIFEKTFVQSLQKGKFESYGKKKLQR 344
RF+DIFE+TF S + KF S +R
Sbjct: 528 RFIDIFEQTF-SSKKNAKFISMASTSARR 555
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 6.0
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +3
Query: 66 NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 236
NFY + YF T G+ S+P F + YP S Y P P ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 6.0
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +3
Query: 132 PEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGK 311
P F +K G YP TS F A + L S N E R L ++ L +
Sbjct: 153 PNFEGLERLKMGMYPRFTSGLFNKAIQVMYNTLVSNWNTEYARLLCNLPFEVIKDLLESD 212
Query: 312 FESYGKKKLQR--IINDLMKLSLAMCSVQHL 398
+ G + R + N+++K+ + H+
Sbjct: 213 KLTVGASSMARYKLANEIVKMRASFRKQNHI 243
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.4 bits (53), Expect = 6.0
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +3
Query: 393 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYMTGLWVTLT 509
HL S STPS LTF T + T H LW L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 287 RTVPTERQIRIVWQEEVTKDYQRSYEIVARHVLGAAPKPFDKHTF-MPSALDFYQTALRD 463
R PT ++ +++ + +++ I++++ + PK FD F S L+ L +
Sbjct: 25 RQSPTRLRVGTSKTDDIYRQKRQTKHIISQNEVFLQPKFFDNQNFDAQSYLNDVLQDLSE 84
Query: 464 PAFYQLYDRIV 496
F LY++++
Sbjct: 85 DEFVSLYNKLL 95
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 288 VQSLQKGKFESYGKKKLQRIINDLMKLSLAMCSVQHLNHSTST 416
++ L KF+SYG K + IN + KL M + H +T
Sbjct: 295 LRQLVDSKFKSYGIKAQKHAINRISKLG-KMITSNHAEEKLTT 336
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -2
Query: 215 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 87
RP + ++V SH+ I+++L + RVP YG KT ++ C
Sbjct: 30 RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,255
Number of Sequences: 5004
Number of extensions: 52605
Number of successful extensions: 170
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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