Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D17
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   6.1  
06_01_0205 + 1564578-1564875,1564979-1565204,1571362-1571503,157...    28   6.1  
03_02_0898 - 12246747-12246833,12247425-12247601,12248054-122481...    28   6.1  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    27   8.0  

>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 261 TVLLRSSLRCVDCSCPAFERMG 196
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>06_01_0205 +
           1564578-1564875,1564979-1565204,1571362-1571503,
           1572273-1572803
          Length = 398

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 282 TFVQSLQKGKFESYG-KKKLQRII---NDLMKLSLAMCSVQHLNHSTSTPSCP 428
           T ++S  K  ++ YG  K L  +    N L++ SLA    +H    +S+PS P
Sbjct: 248 TELKSSNKSDYDDYGCLKPLNELAIHHNSLLQTSLAAVQARHRRSPSSSPSSP 300


>03_02_0898 -
           12246747-12246833,12247425-12247601,12248054-12248176,
           12248545-12248766,12249556-12249606,12249712-12249987
          Length = 311

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 219 NYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKKLQRIIND 356
           N +L  + +Y+  R LD+ + ++V  ++KGK    G + L   I++
Sbjct: 259 NSSLMMITHYQ--RLLDLIKPSYVHIMEKGKIVKTGDRALANYIDE 302


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 219 NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 305
           NYN+  V   KN+ A+R  DIF KT  +  +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,446,988
Number of Sequences: 37544
Number of extensions: 316700
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)